Non-Coding RNA Search

Ova1-OVRM10190B06

Sequence:


               
               AAAAAAGAGTTGTATAAATGAAGTGGGGTCAGATAAATAAGGGCTTCGGAAAAACAAGCA
GGTTTAATGCAATAGGTTAGATTTAATGCATTAAGTACAAATACATTGTATGTTCTTAGA
AAGAAAGGTATCTGACTGAAAGCAGTGTTTAAAGAAAATCTAACTGAAAGACTAGTGCAA
CAGTTTATGTGTGAGATAATAAGGCTGTGGACTTCCACAGTGGAAGTGAGGGTGGAGAAT
AAAGGAATAAATGTCAGGGTTTCATGAAGTCTGGATTTTGGTTAAAAAACAAAAACAACA
AAGTGGGAAAAGCTGTCTAAGTTTTCAACTCGGAAATATGAAAATTGATGGAATAATGTG
GGGGGGAAGTTGGTACAATGACCCAGCACCAGCTCCATGCTCATCAATGAGAACAATGAA
TTGCTTATTTGATTGGAAGTGAATTACTTAGGTTCAAGCTAAGAGAGTGACATCCAAGTG
AAGATGTTTTCCAGACAGTTGGGGTTTGGAAACTGGATGTGGTAGAGACTTATTTGGGTG
CCTCCAATGAACCACACCTCTTGATGGTCATACCTTGTGTAGCCCCTCCCATATTGACTC
TAGTCTTGGGCCGCGTTGACTGAATTTGGTCCATGGGATATTAGCAAACATGATGTANAC
AGTGCTTATACGTTGGAGCTTTGCTCTTACAATCCAGCAATATGTAAAGAAGTCCAAGTT
GGTCTCATGGAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAGAGTTGTATAAATGAAGTGGGGTCAGATAAATAAGGGCTTCGGAAAAACAAGCA
GGTTTAATGCAATAGGTTAGATTTAATGCATTAAGTACAAATACATTGTATGTTCTTAGA
AAGAAAGGTATCTGACTGAAAGCAGTGTTTAAAGAAAATCTAACTGAAAGACTAGTGCAA
CAGTTTATGTGTGAGATAATAAGGCTGTGGACTTCCACAGTGGAAGTGAGGGTGGAGAAT
AAAGGAATAAATGTCAGGGTTTCATGAAGTCTGGATTTTGGTTAAAAAACAAAAACAACA
AAGTGGGAAAAGCTGTCTAAGTTTTCAACTCGGAAATATGAAAATTGATGGAATAATGTG
GGGGGGAAGTTGGTACAATGACCCAGCACCAGCTCCATGCTCATCAATGAGAACAATGAA
TTGCTTATTTGATTGGAAGTGAATTACTTAGGTTCAAGCTAAGAGAGTGACATCCAAGTG
AAGATGTTTTCCAGACAGTTGGGGTTTGGAAACTGGATGTGGTAGAGACTTATTTGGGTG
CCTCCAATGAACCACACCTCTTGATGGTCATACCTTGTGTAGCCCCTCCCATATTGACTC
TAGTCTTGGGCCGCGTTGACTGAATTTGGTCCATGGGATATTAGCAAACATGATGTANAC
AGTGCTTATACGTTGGAGCTTTGCTCTTACAATCCAGCAATATGTAAAGAAGTCCAAGTT
GGTCTCATGGAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               124-242, + strand, RNAz p=0.795417
               

               
               422-579, - strand, RNAz p=0.801925

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               124-242, + strand, RNAz p=0.795417
               

               
               422-579, - strand, RNAz p=0.801925

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-733, gnl|bosTau2|chr17 (20148281-20149008)
               

               
               5-733, gnl|Hg17|chr4 (124131771-124131095)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-733, gnl|bosTau2|chr17 (20148281-20149008)
               

               
               5-733, gnl|Hg17|chr4 (124131771-124131095)

	124-242, + strand, RNAz p=0.795417
	422-579, - strand, RNAz p=0.801925

	5-733, gnl\|bosTau2\|chr17 (20148281-20149008)
	5-733, gnl\|Hg17\|chr4 (124131771-124131095)