Non-Coding RNA Search

Ova1-OVRM10192D03

Sequence:


               
               CATTTCTCTGCTGTGCTTTCTCTTTCTAAGCAGCTACACTGCTTGGCCCTTCAGGGGTCA
GGACAAGAGTGGAGTAGGCTACGCCGCCATCATCTGGTTGCTGATGGCAGCCTTGCCACC
CAAGGTGAGGCAAACTTGAGGCATGTGTTTGGCCCCAGCTCCTAGCAAGTGCCTTAGACA
GGCCTCAGTTATAGCAGAATCTGATGAGAACCTCTCCTTAAAGTCTGCAAAGTACTTCCT
CTCATCTCCTTCGATAATATTACAAACCCTATTGTTCACATGAGGCTCAGAGAGGTTAAG
TGCTTTGACCAGGATCTCACCCAGCTTAAGTCACAAACTTGGGGCTTCAGCCAAGGTCTG
ATTGCAGAGCTTTTCCATTACCCCCAGCATTATGTTGAATTTGGAATCTAGGGAGAACTA
ATAAAAAATGGTAATATGGACCCCAAATCCTTGAGGGCCCTAGGGAGAAACCCAAAGAGG
CTCATTTTCATTCCTTTGTGATAATGCTTCTTCTCTTGGCTGCCGGGGCTCTGTGGCGAA
AGAGTAGGAAGTTTCTTTGGGAAATAGCCATCAGCCTTAGAGAACTTGTGTTCAGAACAA
TTGTCTTGGTACCATATCCAAGCATCAGGCCTTCAGTAGCCACAGAATGAATGCCCCTTG
TGTTCTATCATACACTCAATGAACCAACCACCATTTTGTACAGATCCCCTACTGTGGACA
AGGGCCTCCTCTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATTTCTCTGCTGTGCTTTCTCTTTCTAAGCAGCTACACTGCTTGGCCCTTCAGGGGTCA
GGACAAGAGTGGAGTAGGCTACGCCGCCATCATCTGGTTGCTGATGGCAGCCTTGCCACC
CAAGGTGAGGCAAACTTGAGGCATGTGTTTGGCCCCAGCTCCTAGCAAGTGCCTTAGACA
GGCCTCAGTTATAGCAGAATCTGATGAGAACCTCTCCTTAAAGTCTGCAAAGTACTTCCT
CTCATCTCCTTCGATAATATTACAAACCCTATTGTTCACATGAGGCTCAGAGAGGTTAAG
TGCTTTGACCAGGATCTCACCCAGCTTAAGTCACAAACTTGGGGCTTCAGCCAAGGTCTG
ATTGCAGAGCTTTTCCATTACCCCCAGCATTATGTTGAATTTGGAATCTAGGGAGAACTA
ATAAAAAATGGTAATATGGACCCCAAATCCTTGAGGGCCCTAGGGAGAAACCCAAAGAGG
CTCATTTTCATTCCTTTGTGATAATGCTTCTTCTCTTGGCTGCCGGGGCTCTGTGGCGAA
AGAGTAGGAAGTTTCTTTGGGAAATAGCCATCAGCCTTAGAGAACTTGTGTTCAGAACAA
TTGTCTTGGTACCATATCCAAGCATCAGGCCTTCAGTAGCCACAGAATGAATGCCCCTTG
TGTTCTATCATACACTCAATGAACCAACCACCATTTTGTACAGATCCCCTACTGTGGACA
AGGGCCTCCTCTGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               259-378, - strand, RNAz p=0.628369
               

               
               626-734, + strand, RNAz p=0.757511

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               259-378, - strand, RNAz p=0.628369
               

               
               626-734, + strand, RNAz p=0.757511

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_001399, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_001399, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-734, gnl|bosTau2|chrX (20896369-20895640)
               

               
               1-734, gnl|Hg17|chrX (69040107-69040858)
               

               
               1-734, gnl|Mm7|chrX (95725963-95726636)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-734, gnl|bosTau2|chrX (20896369-20895640)
               

               
               1-734, gnl|Hg17|chrX (69040107-69040858)
               

               
               1-734, gnl|Mm7|chrX (95725963-95726636)

	259-378, - strand, RNAz p=0.628369
	626-734, + strand, RNAz p=0.757511

	1-734, gnl\|bosTau2\|chrX (20896369-20895640)
	1-734, gnl\|Hg17\|chrX (69040107-69040858)
	1-734, gnl\|Mm7\|chrX (95725963-95726636)