Non-Coding RNA Search

Ova1-OVRM10193H01

Sequence:


               
               AATAAGGAATCTCTTTGTTATAATTTATTAAATGCTCTGTGTCTGGCATCAACATTAATT
ATGTAGTGGCTTGAAGCCAACAAGAAGGTTCATGTAGTCATCACCGAAGAGTTAAGTAAG
TTGTCCAGCTGTTGATGGTCTGGTTAAATCATCCCTGAATAGCTGGCATATCTCCCAGAA
CAGGTATTCATTAAAAAAAAAAAAAAAAAAAAAAGGGAAACCTGGATTTTACTACTGAGA
TTACATTGTGTTTTCACAAATGAGAGATAATTCCATTGCAACCCCTTGCTTGTACCCAGA
AACCGCATTCAAAAGCAGATGTGTATCTAGGCTGATGTTGGAAAGTCTACCTGCCTTTCC
CGATCCCCTCGCCTCCCCTCCCACTGACAGCATTTTCCTGATTGTTTCCACTCTCCTGGG
GTCCAGATGGTGGTGGCTGTGGCAGCACCTTGGCTCCTAAACTGGCTATTCCAGAAGGTG
ATAGGAGGTTGGGGATGTGTATTGCAAAGGTCAGACCAGTAGGGATCTTAAGCACATCCT
TGGTTATAAACGTCTCCTCTTGAAGCTCTTGCCAGAGCTGTGCGTTAATGCCAAATGTTA
ATTCTTGCTGGGGACATGATGTCTTATAAATGTTATGAAAGAATATCATTTTTCTTGTAG
AAGTGAAGGTACTTTTAGGGCCATGTTAAGAAAAGGATTCGTTTCCCAAGTAACATCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATAAGGAATCTCTTTGTTATAATTTATTAAATGCTCTGTGTCTGGCATCAACATTAATT
ATGTAGTGGCTTGAAGCCAACAAGAAGGTTCATGTAGTCATCACCGAAGAGTTAAGTAAG
TTGTCCAGCTGTTGATGGTCTGGTTAAATCATCCCTGAATAGCTGGCATATCTCCCAGAA
CAGGTATTCATTAAAAAAAAAAAAAAAAAAAAAAGGGAAACCTGGATTTTACTACTGAGA
TTACATTGTGTTTTCACAAATGAGAGATAATTCCATTGCAACCCCTTGCTTGTACCCAGA
AACCGCATTCAAAAGCAGATGTGTATCTAGGCTGATGTTGGAAAGTCTACCTGCCTTTCC
CGATCCCCTCGCCTCCCCTCCCACTGACAGCATTTTCCTGATTGTTTCCACTCTCCTGGG
GTCCAGATGGTGGTGGCTGTGGCAGCACCTTGGCTCCTAAACTGGCTATTCCAGAAGGTG
ATAGGAGGTTGGGGATGTGTATTGCAAAGGTCAGACCAGTAGGGATCTTAAGCACATCCT
TGGTTATAAACGTCTCCTCTTGAAGCTCTTGCCAGAGCTGTGCGTTAATGCCAAATGTTA
ATTCTTGCTGGGGACATGATGTCTTATAAATGTTATGAAAGAATATCATTTTTCTTGTAG
AAGTGAAGGTACTTTTAGGGCCATGTTAAGAAAAGGATTCGTTTCCCAAGTAACATCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               3-118, - strand, RNAz p=0.873552

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               3-118, - strand, RNAz p=0.873552

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-347, gnl|bosTau2|chr21 (5677444-5677114)
               

               
               3-347, gnl|Hg17|chr15 (94607699-94607389)
               


               
               375-718, gnl|bosTau2|chr21 (5676878-5676535)
               

               
               375-718, gnl|Hg17|chr15 (94607347-94607009)
               

               
               375-718, gnl|Mm7|chr7 (66288592-66288896)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-347, gnl|bosTau2|chr21 (5677444-5677114)
               

               
               3-347, gnl|Hg17|chr15 (94607699-94607389)
               


               
               375-718, gnl|bosTau2|chr21 (5676878-5676535)
               

               
               375-718, gnl|Hg17|chr15 (94607347-94607009)
               

               
               375-718, gnl|Mm7|chr7 (66288592-66288896)

	3-347, gnl\|bosTau2\|chr21 (5677444-5677114)
	3-347, gnl\|Hg17\|chr15 (94607699-94607389)

	375-718, gnl\|bosTau2\|chr21 (5676878-5676535)
	375-718, gnl\|Hg17\|chr15 (94607347-94607009)
	375-718, gnl\|Mm7\|chr7 (66288592-66288896)