Non-Coding RNA Search

Ova1-OVRM10195E07

Sequence:


               
               ATTCAACTCCTATACTGGGCATTTAGATTGTTTGACATTTTTCCCAAAGTTAAATGGTGA
TGTGGCCACCACTCCTGTAATATTTTTACATTGTCCAAGCACCCAATCGTTTCATTAGGG
TACACTCCTGCAAATGGAAATGCTGCACTGAATTTTTTTTTCTTTTTAGGGTggcatatg
gaagttcctggcctaggggtttcattggagctgcagctgctggcctataccacagccaca
gcaatgcgggctctgagccatatccatgacctatgtatgccacagcttgaggcaacactg
gatccttaacccactgagtaaggccaggaattgagcccacatcctcatggatactagttg
ggttcttaaccccctgagccacagtgggaactcTCGAAGGTGTACACACTTTGAAAGCTT
TTATTTGTGAGATCTGATTGTTTTTAGGGGCTCTTTGAGAAGGTTTCAGGGAGACCCTAC
AGAGGCTGGAGGACATGCTCTTTGGTATGAAATTACCTTTTCTGAAGAAAAATAAAATCT
CTACCAGAGAGCTTGTCTCTAGGGGCTGACCATCTGGGTAATTTTTATTTTTTTCTTTAT
GCACTTCTATGTTAATTTTTTTTCTACTTTGCACATGCATTGTTCTTTATAATAATTTTT
CTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCAACTCCTATACTGGGCATTTAGATTGTTTGACATTTTTCCCAAAGTTAAATGGTGA
TGTGGCCACCACTCCTGTAATATTTTTACATTGTCCAAGCACCCAATCGTTTCATTAGGG
TACACTCCTGCAAATGGAAATGCTGCACTGAATTTTTTTTTCTTTTTAGGGTggcatatg
gaagttcctggcctaggggtttcattggagctgcagctgctggcctataccacagccaca
gcaatgcgggctctgagccatatccatgacctatgtatgccacagcttgaggcaacactg
gatccttaacccactgagtaaggccaggaattgagcccacatcctcatggatactagttg
ggttcttaaccccctgagccacagtgggaactcTCGAAGGTGTACACACTTTGAAAGCTT
TTATTTGTGAGATCTGATTGTTTTTAGGGGCTCTTTGAGAAGGTTTCAGGGAGACCCTAC
AGAGGCTGGAGGACATGCTCTTTGGTATGAAATTACCTTTTCTGAAGAAAAATAAAATCT
CTACCAGAGAGCTTGTCTCTAGGGGCTGACCATCTGGGTAATTTTTATTTTTTTCTTTAT
GCACTTCTATGTTAATTTTTTTTCTACTTTGCACATGCATTGTTCTTTATAATAATTTTT
CTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               9-106, - strand, RNAz p=0.856451

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-106, - strand, RNAz p=0.856451

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

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               9-152, gnl|bosTau2|chr17 (29834837-29834695)
               

               
               9-152, gnl|canFam2|chr26 (11667724-11667961)
               

               
               9-152, gnl|hg17|chr12 (109839352-109839582)
               

               
               9-152, gnl|Hg17|chr12 (109839410-109839544)
               

               
               9-152, gnl|loxAfr1|scaffold_1375 (120979-121214)
               

               
               9-152, gnl|panTro1|chr10 (112412525-112412755)
               

               
               9-152, gnl|rheMac2|chr11 (111872196-111872422)
               


               
               396-663, gnl|bosTau2|chr17 (29834697-29834424)
               

               
               396-663, gnl|Hg17|chr12 (109839542-109839810)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-152, gnl|bosTau2|chr17 (29834837-29834695)
               

               
               9-152, gnl|canFam2|chr26 (11667724-11667961)
               

               
               9-152, gnl|hg17|chr12 (109839352-109839582)
               

               
               9-152, gnl|Hg17|chr12 (109839410-109839544)
               

               
               9-152, gnl|loxAfr1|scaffold_1375 (120979-121214)
               

               
               9-152, gnl|panTro1|chr10 (112412525-112412755)
               

               
               9-152, gnl|rheMac2|chr11 (111872196-111872422)
               


               
               396-663, gnl|bosTau2|chr17 (29834697-29834424)
               

               
               396-663, gnl|Hg17|chr12 (109839542-109839810)

	9-152, gnl\|bosTau2\|chr17 (29834837-29834695)
	9-152, gnl\|canFam2\|chr26 (11667724-11667961)
	9-152, gnl\|hg17\|chr12 (109839352-109839582)
	9-152, gnl\|Hg17\|chr12 (109839410-109839544)
	9-152, gnl\|loxAfr1\|scaffold_1375 (120979-121214)
	9-152, gnl\|panTro1\|chr10 (112412525-112412755)
	9-152, gnl\|rheMac2\|chr11 (111872196-111872422)

	396-663, gnl\|bosTau2\|chr17 (29834697-29834424)
	396-663, gnl\|Hg17\|chr12 (109839542-109839810)