Non-Coding RNA Search

Ova1-OVRM10195G11

Sequence:


               
               AGGGGCGGAGCCAGGCGCGTACCTGGAGGTTTCCTCCCCAACCCGCCCTACTTGGCCCCG
CCCAGGTCGGCTGAGGTCTGCCGCCGAAGGGGGCGGTCCCCTTGCGTCTCCCGGCGCCGC
ACGGCCCTCGCCAGGAGACCCCTGCTCTAGGAGCCGCCCAGTGCCTTCCTTTCCGCTCCC
AGGATCTGGAGCTGCCAGCTCCCGAGAGCCGCTTCCCCCGCAGGCGGCGCGATGGGCTTC
GGGAACTCCACCGCCGCCCGTGCCTGCGCGGGCCAAGGTGCAGGACGCAGGCTGGTGGCT
GGGGGCCTGAGGACTGCAACATGGAGGCGGTGGGGAGCCCTGCAGGGCCCGCCTCAATGG
GAGAGGCCAGGAGAGAGGCACCAGGAAGGAAGTGTGAGCTGAAGTTTGGCACTTGCCATC
AGCTGCTAGGTGGAGTAAAACATGAGCCAGGGCAGCTTCGGTCCCTTTGGACCCTTTGGT
CCCTGGTCTCCTGATGCAGACGACTGGCCAGAGTGCCCCGACGGGGTAAGGGACATGAGA
CTTTGTTGCACTTTCTGCCTTCCTTTCTTCTCTCAAGCTGGCCTCTTTTCCTCNCTTTGA
AATCTTTGAAGACCCAAGACACTTCTGTTTGTTTGTTTATTAGTACTTGGATCTGAATGT
TCCTTGTCTCTGTAGGTTTTCTGAGACTACAATCTTGAATTTAAGGGAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGCGGAGCCAGGCGCGTACCTGGAGGTTTCCTCCCCAACCCGCCCTACTTGGCCCCG
CCCAGGTCGGCTGAGGTCTGCCGCCGAAGGGGGCGGTCCCCTTGCGTCTCCCGGCGCCGC
ACGGCCCTCGCCAGGAGACCCCTGCTCTAGGAGCCGCCCAGTGCCTTCCTTTCCGCTCCC
AGGATCTGGAGCTGCCAGCTCCCGAGAGCCGCTTCCCCCGCAGGCGGCGCGATGGGCTTC
GGGAACTCCACCGCCGCCCGTGCCTGCGCGGGCCAAGGTGCAGGACGCAGGCTGGTGGCT
GGGGGCCTGAGGACTGCAACATGGAGGCGGTGGGGAGCCCTGCAGGGCCCGCCTCAATGG
GAGAGGCCAGGAGAGAGGCACCAGGAAGGAAGTGTGAGCTGAAGTTTGGCACTTGCCATC
AGCTGCTAGGTGGAGTAAAACATGAGCCAGGGCAGCTTCGGTCCCTTTGGACCCTTTGGT
CCCTGGTCTCCTGATGCAGACGACTGGCCAGAGTGCCCCGACGGGGTAAGGGACATGAGA
CTTTGTTGCACTTTCTGCCTTCCTTTCTTCTCTCAAGCTGGCCTCTTTTCCTCNCTTTGA
AATCTTTGAAGACCCAAGACACTTCTGTTTGTTTGTTTATTAGTACTTGGATCTGAATGT
TCCTTGTCTCTGTAGGTTTTCTGAGACTACAATCTTGAATTTAAGGGAGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               276-392, - strand, RNAz p=0.755694

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               276-392, - strand, RNAz p=0.755694

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-392, gnl|bosTau2|chr2 (80861510-80861878)
               

               
               22-392, gnl|Hg17|chr12 (104226930-104227242)
               


               
               562-711, gnl|bosTau2|chr2 (16807500-16807350)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-392, gnl|bosTau2|chr2 (80861510-80861878)
               

               
               22-392, gnl|Hg17|chr12 (104226930-104227242)
               


               
               562-711, gnl|bosTau2|chr2 (16807500-16807350)

	22-392, gnl\|bosTau2\|chr2 (80861510-80861878)
	22-392, gnl\|Hg17\|chr12 (104226930-104227242)

	562-711, gnl\|bosTau2\|chr2 (16807500-16807350)