Non-Coding RNA Search

Ova1-OVRM10201F11

Sequence:


               
               TTAACTCCTCTATGTCCTTACAAAGCGCTCAGAAACTGCTCCCAGGGGAAGTGTTACCTC
TCCATCTGTAGGCAGGGACAGGTGCCTCCTCACCTCTGTGCCTTCTACCACCTGGTGGTA
CCTGCCTGCTCGTCCACTTCTCCCACGAAACTCTGAGCTTTCCGAAAGCAAGAACCAAAC
CTTTTATTTCTATGGCCACAACCCGGAGTGGCACATTGGCTGACAGAGTTGGAAATCAAT
AGGTGGTGAATGAAAGGAGACATCCAGGAAGACTCCTTGGAGGAGGCAAGCATTTTAGCC
AGATATAAAGAGTCGATTCAGATTTGGACATGTAGAGAGAAGACGAAGAACTGTCTAGAA
GAAGAATCTGGAGTCTGAGCGTGGTCAGAGTCAGTCTTCAACACGGCATGGGGAAGGAAT
AAGAGAAAGTCCAGTTTGACTGACCACAGGATGTGGGGTCTTGAAAGCCAGTTGAGGGAG
CTAGGAAAGGAAAGGTAGAATTAATGTGACTCAGAAAGGGAGTGAGTATGGGCGTCCAGG
AAAGACCCACAGATAAGGAGGAAATGGAGCGGACCATTAACTGGAAAAGGAGTACAGATG
GACAAGGATCAAGAGGGTGGTTTTGGCCAGGGTAGACCTGGGGACACAATTAGAACACAT
TCCACTGCCTTGTCTTTTTGTGTCTTCCCACTGATCTTATTCAGGTTTAGATCTCCAGGG
CTTAGCAAGCACCCCGTAATTTCNTAATGAATGAATGAATGAATGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTAACTCCTCTATGTCCTTACAAAGCGCTCAGAAACTGCTCCCAGGGGAAGTGTTACCTC
TCCATCTGTAGGCAGGGACAGGTGCCTCCTCACCTCTGTGCCTTCTACCACCTGGTGGTA
CCTGCCTGCTCGTCCACTTCTCCCACGAAACTCTGAGCTTTCCGAAAGCAAGAACCAAAC
CTTTTATTTCTATGGCCACAACCCGGAGTGGCACATTGGCTGACAGAGTTGGAAATCAAT
AGGTGGTGAATGAAAGGAGACATCCAGGAAGACTCCTTGGAGGAGGCAAGCATTTTAGCC
AGATATAAAGAGTCGATTCAGATTTGGACATGTAGAGAGAAGACGAAGAACTGTCTAGAA
GAAGAATCTGGAGTCTGAGCGTGGTCAGAGTCAGTCTTCAACACGGCATGGGGAAGGAAT
AAGAGAAAGTCCAGTTTGACTGACCACAGGATGTGGGGTCTTGAAAGCCAGTTGAGGGAG
CTAGGAAAGGAAAGGTAGAATTAATGTGACTCAGAAAGGGAGTGAGTATGGGCGTCCAGG
AAAGACCCACAGATAAGGAGGAAATGGAGCGGACCATTAACTGGAAAAGGAGTACAGATG
GACAAGGATCAAGAGGGTGGTTTTGGCCAGGGTAGACCTGGGGACACAATTAGAACACAT
TCCACTGCCTTGTCTTTTTGTGTCTTCCCACTGATCTTATTCAGGTTTAGATCTCCAGGG
CTTAGCAAGCACCCCGTAATTTCNTAATGAATGAATGAATGAATGCAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1-131, + strand, RNAz p=0.946389

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-131, + strand, RNAz p=0.946389

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-310, gnl|bosTau2|chr9 (51603973-51604289)
               

               
               1-310, gnl|canFam2|chr1 (42846086-42846441)
               

               
               1-310, gnl|dasNov1|scaffold_99933 (2634-2362)
               

               
               1-310, gnl|echTel1|scaffold_322196 (22939-23288)
               

               
               1-310, gnl|hg17|chr6 (149313460-149313822)
               

               
               1-310, gnl|Hg17|chr6 (149313512-149313821)
               

               
               1-310, gnl|mm7|chr10 (8010926-8010606)
               

               
               1-310, gnl|Mm7|chr10 (8010885-8010594)
               

               
               1-310, gnl|panTro1|chr5 (152763528-152763890)
               

               
               1-310, gnl|rheMac2|chr4 (114351942-114351577)
               

               
               1-310, gnl|rn3|chr1 (2971141-2970807)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-310, gnl|bosTau2|chr9 (51603973-51604289)
               

               
               1-310, gnl|canFam2|chr1 (42846086-42846441)
               

               
               1-310, gnl|dasNov1|scaffold_99933 (2634-2362)
               

               
               1-310, gnl|echTel1|scaffold_322196 (22939-23288)
               

               
               1-310, gnl|hg17|chr6 (149313460-149313822)
               

               
               1-310, gnl|Hg17|chr6 (149313512-149313821)
               

               
               1-310, gnl|mm7|chr10 (8010926-8010606)
               

               
               1-310, gnl|Mm7|chr10 (8010885-8010594)
               

               
               1-310, gnl|panTro1|chr5 (152763528-152763890)
               

               
               1-310, gnl|rheMac2|chr4 (114351942-114351577)
               

               
               1-310, gnl|rn3|chr1 (2971141-2970807)

	1-310, gnl\|bosTau2\|chr9 (51603973-51604289)
	1-310, gnl\|canFam2\|chr1 (42846086-42846441)
	1-310, gnl\|dasNov1\|scaffold_99933 (2634-2362)
	1-310, gnl\|echTel1\|scaffold_322196 (22939-23288)
	1-310, gnl\|hg17\|chr6 (149313460-149313822)
	1-310, gnl\|Hg17\|chr6 (149313512-149313821)
	1-310, gnl\|mm7\|chr10 (8010926-8010606)
	1-310, gnl\|Mm7\|chr10 (8010885-8010594)
	1-310, gnl\|panTro1\|chr5 (152763528-152763890)
	1-310, gnl\|rheMac2\|chr4 (114351942-114351577)
	1-310, gnl\|rn3\|chr1 (2971141-2970807)