Non-Coding RNA Search

Ova1-OVRM10205C12

Sequence:


               
               TGAAAATACACAGACAGCAGTGAAATTCTGTGACAGCAATCAGTGTGGAAAAGTCCTCAG
CCTCAAACAAGCACTCAGTCACAATCTGAAATTTCCCGTTGGGGAGAAATCAAATATGTG
TACTGAATTTGGGAAGATCTTCACCCAAAGGTCACACCTCTTTGCATCTCAAAGAATCCA
TACTATGGAAAAACCTCATGAACTTAGTAAATGTGTAAATGTTTTTACACAGAAGCCACT
ACTCAGTATTTATTTGAGAGTTCATAGAGATGAAAAACTATATATATGTTCTGAATGTGG
GAAGGCATTCATCCAGAATTCAGAATTAATTATGCATGAGAAAATTCATACTAGAGAAAA
ACCCTATAAATGTAGTGAATGTGGAAAATCATTTTTCCAAGTATCATCTCTACTTAGGCA
TCAGACAACCCATACTGGAGAAAAACTTTATGAATGCAGTGAATGTGGGAAAGGCTTCTC
CCTGAACTCAGCCCTCAATGTGCACcagaaaattcatactggagaaagacaccacaagtg
cagtgagtgtgggaaggcctttacgcaaaagtcaacactcagaatgcatcagagaattca
tacaggagagagatcctacatatgtactgagtgtgGGCAGGCCTTCATCCAAAAGGCACA
CTTGATTGCACATCAAAGAATTCATACTGGAGAGAAGCCTTATGAATGCAGTGACTGTGG
G

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAATACACAGACAGCAGTGAAATTCTGTGACAGCAATCAGTGTGGAAAAGTCCTCAG
CCTCAAACAAGCACTCAGTCACAATCTGAAATTTCCCGTTGGGGAGAAATCAAATATGTG
TACTGAATTTGGGAAGATCTTCACCCAAAGGTCACACCTCTTTGCATCTCAAAGAATCCA
TACTATGGAAAAACCTCATGAACTTAGTAAATGTGTAAATGTTTTTACACAGAAGCCACT
ACTCAGTATTTATTTGAGAGTTCATAGAGATGAAAAACTATATATATGTTCTGAATGTGG
GAAGGCATTCATCCAGAATTCAGAATTAATTATGCATGAGAAAATTCATACTAGAGAAAA
ACCCTATAAATGTAGTGAATGTGGAAAATCATTTTTCCAAGTATCATCTCTACTTAGGCA
TCAGACAACCCATACTGGAGAAAAACTTTATGAATGCAGTGAATGTGGGAAAGGCTTCTC
CCTGAACTCAGCCCTCAATGTGCACcagaaaattcatactggagaaagacaccacaagtg
cagtgagtgtgggaaggcctttacgcaaaagtcaacactcagaatgcatcagagaattca
tacaggagagagatcctacatatgtactgagtgtgGGCAGGCCTTCATCCAAAAGGCACA
CTTGATTGCACATCAAAGAATTCATACTGGAGAGAAGCCTTATGAATGCAGTGACTGTGG
G

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61878547|ref|XP_610953.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61878547|ref|XP_610953.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               207-326, + strand, RNAz p=0.61446

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-326, + strand, RNAz p=0.61446

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-721, gnl|bosTau2|chr14 (25795281-25794563)
               

               
               3-721, gnl|Hg17|chr19 (49069673-49068955)
               

               
               3-721, gnl|Mm7|chr7 (26999928-26999210)
               


               
               11-720, gnl|bosTau2|chr10 (8996771-8996062)
               

               
               11-720, gnl|Hg17|chr19 (42818576-42817783)
               

               
               11-720, gnl|Mm7|chr2 (127310202-127309577)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-721, gnl|bosTau2|chr14 (25795281-25794563)
               

               
               3-721, gnl|Hg17|chr19 (49069673-49068955)
               

               
               3-721, gnl|Mm7|chr7 (26999928-26999210)
               


               
               11-720, gnl|bosTau2|chr10 (8996771-8996062)
               

               
               11-720, gnl|Hg17|chr19 (42818576-42817783)
               

               
               11-720, gnl|Mm7|chr2 (127310202-127309577)

	3-721, gnl\|bosTau2\|chr14 (25795281-25794563)
	3-721, gnl\|Hg17\|chr19 (49069673-49068955)
	3-721, gnl\|Mm7\|chr7 (26999928-26999210)

	11-720, gnl\|bosTau2\|chr10 (8996771-8996062)
	11-720, gnl\|Hg17\|chr19 (42818576-42817783)
	11-720, gnl\|Mm7\|chr2 (127310202-127309577)