Non-Coding RNA Search

Ova1-OVRM10206A04

Sequence:


               
               TGCAAATATTCCATGAGATGGCATGTGAAAGTCCCCCAGGAGAGGGCCTAGTCTGTAGTA
AGTGCTCAATAAATGGGGTTAAATTCAGAATCAGACTTGACAGAGTATGAAATCATGCGC
CTTAATGTGAAGGCCTCACAGGCAAAGTCTATCCAGATCCAAAAAGCCTCTAGGGCAAGT
TCACAAGGACAGCTTCATGAAGGACTTTTACACATTATTCATTATTTCTATTCATACAAG
GTTTAATGACTGGTGAAAAGAGCGTAGAAAAGAGCAATGAAAATGATGAAAGGTCTGTGA
GGTCATTCCTCTGAGGAAAAGGCTAGAGGAGATGGGTTCTTTAATCCGGGCAGGTGAAGA
TTGCAGCATGACTTAATAATGGACTTCAAGCATGATTGATGTTAGTAACTGAAAGAATAA
TGGAAGGGTTGCCTTAAAGTGGAAACACATCCTTATCATCCTTCCCAAAACCAGCTATAT
ATTTCCTAAGAGCACAAGCAGATGAAATAGATTCCTGTTTCTGATAACAATAGCTACTGG
AGCCAGAGCCAAGGAGAAAAACCCCTGCCTGTGTACTTGTCAGAGGCAGGATCTGGATGG
CTGGGGGTGAGACATTTTTGAGAGCACTCTGCCTCCTGGACTTCAGGCAACTTCGTGACA
TTGGTCTGCAGGCTGTGGTCTCGCCACTTAATCTGAGCTAGACTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAAATATTCCATGAGATGGCATGTGAAAGTCCCCCAGGAGAGGGCCTAGTCTGTAGTA
AGTGCTCAATAAATGGGGTTAAATTCAGAATCAGACTTGACAGAGTATGAAATCATGCGC
CTTAATGTGAAGGCCTCACAGGCAAAGTCTATCCAGATCCAAAAAGCCTCTAGGGCAAGT
TCACAAGGACAGCTTCATGAAGGACTTTTACACATTATTCATTATTTCTATTCATACAAG
GTTTAATGACTGGTGAAAAGAGCGTAGAAAAGAGCAATGAAAATGATGAAAGGTCTGTGA
GGTCATTCCTCTGAGGAAAAGGCTAGAGGAGATGGGTTCTTTAATCCGGGCAGGTGAAGA
TTGCAGCATGACTTAATAATGGACTTCAAGCATGATTGATGTTAGTAACTGAAAGAATAA
TGGAAGGGTTGCCTTAAAGTGGAAACACATCCTTATCATCCTTCCCAAAACCAGCTATAT
ATTTCCTAAGAGCACAAGCAGATGAAATAGATTCCTGTTTCTGATAACAATAGCTACTGG
AGCCAGAGCCAAGGAGAAAAACCCCTGCCTGTGTACTTGTCAGAGGCAGGATCTGGATGG
CTGGGGGTGAGACATTTTTGAGAGCACTCTGCCTCCTGGACTTCAGGCAACTTCGTGACA
TTGGTCTGCAGGCTGTGGTCTCGCCACTTAATCTGAGCTAGACTAC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               199-353, - strand, RNAz p=0.875374
               

               
               491-610, + strand, RNAz p=0.775056

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-353, - strand, RNAz p=0.875374
               

               
               491-610, + strand, RNAz p=0.775056

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-703, gnl|bosTau2|chr29 (16604046-16603341)
               

               
               1-703, gnl|canFam2|chr21 (46560604-46561383)
               

               
               1-703, gnl|dasNov1|scaffold_3118 (41574-40794)
               

               
               1-703, gnl|echTel1|scaffold_311373 (147643-148412)
               

               
               1-703, gnl|hg17|chr11 (21458967-21459745)
               

               
               1-703, gnl|Hg17|chr11 (21459185-21459881)
               

               
               1-703, gnl|loxAfr1|scaffold_760 (105653-106428)
               

               
               1-703, gnl|mm7|chr7 (47008546-47009262)
               

               
               1-703, gnl|Mm7|chr7 (47008734-47009397)
               

               
               1-703, gnl|panTro1|chr9 (21709843-21710620)
               

               
               1-703, gnl|rheMac2|chr14 (50391082-50390304)
               

               
               1-703, gnl|rn3|chr1 (100759162-100759873)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-703, gnl|bosTau2|chr29 (16604046-16603341)
               

               
               1-703, gnl|canFam2|chr21 (46560604-46561383)
               

               
               1-703, gnl|dasNov1|scaffold_3118 (41574-40794)
               

               
               1-703, gnl|echTel1|scaffold_311373 (147643-148412)
               

               
               1-703, gnl|hg17|chr11 (21458967-21459745)
               

               
               1-703, gnl|Hg17|chr11 (21459185-21459881)
               

               
               1-703, gnl|loxAfr1|scaffold_760 (105653-106428)
               

               
               1-703, gnl|mm7|chr7 (47008546-47009262)
               

               
               1-703, gnl|Mm7|chr7 (47008734-47009397)
               

               
               1-703, gnl|panTro1|chr9 (21709843-21710620)
               

               
               1-703, gnl|rheMac2|chr14 (50391082-50390304)
               

               
               1-703, gnl|rn3|chr1 (100759162-100759873)

	199-353, - strand, RNAz p=0.875374
	491-610, + strand, RNAz p=0.775056

	1-703, gnl\|bosTau2\|chr29 (16604046-16603341)
	1-703, gnl\|canFam2\|chr21 (46560604-46561383)
	1-703, gnl\|dasNov1\|scaffold_3118 (41574-40794)
	1-703, gnl\|echTel1\|scaffold_311373 (147643-148412)
	1-703, gnl\|hg17\|chr11 (21458967-21459745)
	1-703, gnl\|Hg17\|chr11 (21459185-21459881)
	1-703, gnl\|loxAfr1\|scaffold_760 (105653-106428)
	1-703, gnl\|mm7\|chr7 (47008546-47009262)
	1-703, gnl\|Mm7\|chr7 (47008734-47009397)
	1-703, gnl\|panTro1\|chr9 (21709843-21710620)
	1-703, gnl\|rheMac2\|chr14 (50391082-50390304)
	1-703, gnl\|rn3\|chr1 (100759162-100759873)