Non-Coding RNA Search

Ova1-OVRM10206D05

Sequence:


               
               AATGCTCGGAGGCGCCCCGCGGGGCAGCTGGCTACTCGGCGACCGGCGGCGAGGCTGGAG
GAGCGCGGCCCCGAGGAAGCTGCCCTGTGAACCCCATCCACCTCCTGTGAGAGGAGCCAG
GCACAAGATGAACCAGCCCCCCGTTCGCTGCTCAAGATGCACCAGACCATCCCACTGAAC
CCCGAGAGCCCAAAAATGTCCGCGTGCAGCGACTTTGTGGAGCACATCTGGAAGCCCGGG
TCCTGCAAAAACTGCTTCTGCCTGCGCAGCGACCACCAGCTGGAGCCCGGCCGCCCCCAG
CCCCGAGCGAGCAGCCTGCCCCCTCCGCCTCGCTTGCCCCCCAGGCCCGAGAACGGGCGC
CCGGAGGATGACAGCCTGAGCAGCTCGCCCTACTCCAAGCCCACCATTGCTGTGAAGCCC
ACCATGATGAGCTCCGAGGCCTCTGATGGGTGGACGGAGCCCGGCGTGAGTGCTGACGTG
GCACAGGTGAGGCTGACTCAGCCCCGTGGCATTTTACAGGGGCTGCTCCTGTTGTAACAC
TGGGACTGGCGGGCGGCCAGGGAGGGCTGTTCCAGCAAGACTCCTGCAGGACAGCTTCCA
GTCAGCTCCTTCCTGACTGCGGCCCTCTCTTCTCATTGCCCTCCTTTCTCTCAGTCCCTT
TTAGGGTAAAACCATTAATCCAGTCCCTCCAAGTTTATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATGCTCGGAGGCGCCCCGCGGGGCAGCTGGCTACTCGGCGACCGGCGGCGAGGCTGGAG
GAGCGCGGCCCCGAGGAAGCTGCCCTGTGAACCCCATCCACCTCCTGTGAGAGGAGCCAG
GCACAAGATGAACCAGCCCCCCGTTCGCTGCTCAAGATGCACCAGACCATCCCACTGAAC
CCCGAGAGCCCAAAAATGTCCGCGTGCAGCGACTTTGTGGAGCACATCTGGAAGCCCGGG
TCCTGCAAAAACTGCTTCTGCCTGCGCAGCGACCACCAGCTGGAGCCCGGCCGCCCCCAG
CCCCGAGCGAGCAGCCTGCCCCCTCCGCCTCGCTTGCCCCCCAGGCCCGAGAACGGGCGC
CCGGAGGATGACAGCCTGAGCAGCTCGCCCTACTCCAAGCCCACCATTGCTGTGAAGCCC
ACCATGATGAGCTCCGAGGCCTCTGATGGGTGGACGGAGCCCGGCGTGAGTGCTGACGTG
GCACAGGTGAGGCTGACTCAGCCCCGTGGCATTTTACAGGGGCTGCTCCTGTTGTAACAC
TGGGACTGGCGGGCGGCCAGGGAGGGCTGTTCCAGCAAGACTCCTGCAGGACAGCTTCCA
GTCAGCTCCTTCCTGACTGCGGCCCTCTCTTCTCATTGCCCTCCTTTCTCTCAGTCCCTT
TTAGGGTAAAACCATTAATCCAGTCCCTCCAAGTTTATTTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8BN31_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BN31_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               343-462, - strand, RNAz p=0.809788
               

               
               503-638, + strand, RNAz p=0.983731

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               343-462, - strand, RNAz p=0.809788
               

               
               503-638, + strand, RNAz p=0.983731

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               74-701, gnl|bosTau2|chr27 (15774019-15774676)
               

               
               74-701, gnl|Hg17|chr8 (8276756-8276103)
               

               
               74-701, gnl|Mm7|chr8 (34864926-34865595)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               74-701, gnl|bosTau2|chr27 (15774019-15774676)
               

               
               74-701, gnl|Hg17|chr8 (8276756-8276103)
               

               
               74-701, gnl|Mm7|chr8 (34864926-34865595)

	343-462, - strand, RNAz p=0.809788
	503-638, + strand, RNAz p=0.983731

	74-701, gnl\|bosTau2\|chr27 (15774019-15774676)
	74-701, gnl\|Hg17\|chr8 (8276756-8276103)
	74-701, gnl\|Mm7\|chr8 (34864926-34865595)