Non-Coding RNA Search

Ova1-OVRM10210C04

Sequence:


               
               AGAAAAAGAAGTCTcaaatcaacaacctaacctaccacctaagaggattagaaaaagaat
gaacaaaacctaaagtcagcagaagaaaggaaatcataaagatcagagaggaaatcaata
atataACAGAGATTAAAAAATAGAAAAAAAATAAGTAAAACAAAGAACTAGTTCTTTGAA
ATGGTAAATAAATAAAATTGATAAACCTCTGGCCAGATTCACCAAGAAGAAGAGAGAGAA
AACCAAAATAAACAAAATAAGGAATGAAAAAGGAAAGATCTCAAATGATACTGCAGATAT
ACAAAAAAAATAAGAGAATAGTATAAAAATTATACACCAATAAATTTGGAAACCTAGGAG
GAATGGACAACTTCCTAGAGTTTTGCTAGGCTGTAAGTCTGAGTCAAGAAGAAACAGATC
ATTTAatcactagaaattaaattgaatatataataaaaatactcccccaaaaacaaaagt
ccaggaccagatggcttcacagactaattctaccaaacaaagaagaacttatactaattc
atcttaaacttttccaagattgaagaaggcacactcccaaagacattctatgaagccacc
atcaccctaataccaaaaccagaaaaagatactagcaaaaaggaaaattaaaggcaatat
ctttggttagtataccaaaaattctcaacaaaattttagccagcaaactccagcaatata
tcaGAAAAAAATCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAAAAGAAGTCTcaaatcaacaacctaacctaccacctaagaggattagaaaaagaat
gaacaaaacctaaagtcagcagaagaaaggaaatcataaagatcagagaggaaatcaata
atataACAGAGATTAAAAAATAGAAAAAAAATAAGTAAAACAAAGAACTAGTTCTTTGAA
ATGGTAAATAAATAAAATTGATAAACCTCTGGCCAGATTCACCAAGAAGAAGAGAGAGAA
AACCAAAATAAACAAAATAAGGAATGAAAAAGGAAAGATCTCAAATGATACTGCAGATAT
ACAAAAAAAATAAGAGAATAGTATAAAAATTATACACCAATAAATTTGGAAACCTAGGAG
GAATGGACAACTTCCTAGAGTTTTGCTAGGCTGTAAGTCTGAGTCAAGAAGAAACAGATC
ATTTAatcactagaaattaaattgaatatataataaaaatactcccccaaaaacaaaagt
ccaggaccagatggcttcacagactaattctaccaaacaaagaagaacttatactaattc
atcttaaacttttccaagattgaagaaggcacactcccaaagacattctatgaagccacc
atcaccctaataccaaaaccagaaaaagatactagcaaaaaggaaaattaaaggcaatat
ctttggttagtataccaaaaattctcaacaaaattttagccagcaaactccagcaatata
tcaGAAAAAAATCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56486548|emb|CAI01845.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56486548|emb|CAI01845.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               278-396, - strand, RNAz p=0.836673
               

               
               541-691, - strand, RNAz p=0.873661

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               278-396, - strand, RNAz p=0.836673
               

               
               541-691, - strand, RNAz p=0.873661

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               4-734, gnl|bosTau2|chr10 (29101423-29100683)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-734, gnl|bosTau2|chr10 (29101423-29100683)

	278-396, - strand, RNAz p=0.836673
	541-691, - strand, RNAz p=0.873661