Non-Coding RNA Search

Ova1-OVRM10212D05

Sequence:


               
               CACTTTTGTTTTGTAATAAGTTCATTTGTACTTTTTAATTAGATTCCACATGTAAGTAAT
ATCATATAtgttcttgtctgacttcacttagtattataatctctaggtccattcatgttg
ctgtaaatggcattctttcattctttttcatggatgagtaatattccattgtatgtacat
accacatcttctttattcattcatctgttgatggacatttaggttgcttccatgtcctgg
ttgttgtaaatggtaccattatgaacattgggCATAGCATGTATCTTTTTGATATGTCTT
TTTTACCTAAAGCTTTCATTTTTTGACATGGGATACAGTTTTAATCACTGTCATTCAGAA
CCCTATGTCTCCCAGTAGTATAATTCCCACCTTCTTTCCCATTGCTGCTCTTTGCATGGT
CACACTGGGTGTCCACACTGGTCCAGATTTTATTATTTTATTGATCACAATTGTTTAGAT
ACTAAAATTGTATGTCTGTGTGTGCACACACACATAAAATCTGACCTTTTTAAGTTCTAG
TTGAAAAGGACCTTTACACTAAAACATTATTTACCTCTTAAACATGCAGAATTATCAACC
TTTTCTAACATTTCTCCTTCACCTGTGCTTGCTGATTGGGAGTGAGAAAACTGGCTGACT
CTCTAATCCTTATTATACTCTTGAAACCATTGTATAGAACTGCATGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTTTTGTTTTGTAATAAGTTCATTTGTACTTTTTAATTAGATTCCACATGTAAGTAAT
ATCATATAtgttcttgtctgacttcacttagtattataatctctaggtccattcatgttg
ctgtaaatggcattctttcattctttttcatggatgagtaatattccattgtatgtacat
accacatcttctttattcattcatctgttgatggacatttaggttgcttccatgtcctgg
ttgttgtaaatggtaccattatgaacattgggCATAGCATGTATCTTTTTGATATGTCTT
TTTTACCTAAAGCTTTCATTTTTTGACATGGGATACAGTTTTAATCACTGTCATTCAGAA
CCCTATGTCTCCCAGTAGTATAATTCCCACCTTCTTTCCCATTGCTGCTCTTTGCATGGT
CACACTGGGTGTCCACACTGGTCCAGATTTTATTATTTTATTGATCACAATTGTTTAGAT
ACTAAAATTGTATGTCTGTGTGTGCACACACACATAAAATCTGACCTTTTTAAGTTCTAG
TTGAAAAGGACCTTTACACTAAAACATTATTTACCTCTTAAACATGCAGAATTATCAACC
TTTTCTAACATTTCTCCTTCACCTGTGCTTGCTGATTGGGAGTGAGAAAACTGGCTGACT
CTCTAATCCTTATTATACTCTTGAAACCATTGTATAGAACTGCATGGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56492562|emb|CAI01941.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56492562|emb|CAI01941.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               119-304, + strand, RNAz p=0.952609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-304, + strand, RNAz p=0.952609

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-308, gnl|bosTau2|chr3 (522607-522311)
               


               
               2-304, gnl|bosTau2|chr12 (4371112-4370805)
               


               
               3-303, gnl|bosTau2|chr11 (55117384-55117067)
               


               
               4-290, gnl|bosTau2|chr10 (21462133-21461841)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr3 (522607-522311)
               


               
               2-304, gnl|bosTau2|chr12 (4371112-4370805)
               


               
               3-303, gnl|bosTau2|chr11 (55117384-55117067)
               


               
               4-290, gnl|bosTau2|chr10 (21462133-21461841)

	1-308, gnl\|bosTau2\|chr3 (522607-522311)

	2-304, gnl\|bosTau2\|chr12 (4371112-4370805)

	3-303, gnl\|bosTau2\|chr11 (55117384-55117067)

	4-290, gnl\|bosTau2\|chr10 (21462133-21461841)