Non-Coding RNA Search

Ova1-OVRM10212D07

Sequence:


               
               GCAGAAAATCCAGGCAAGAAAGGCTAATTGAATGAAGAGAGAGAATTAAGTTAAAAAATA
GAGTACAATCTAGTATCACATTTTCACTAGTGTAACTTGAAATGAAGGTGTCTTCAAGTC
GCCAGTGATGCCAGAGTGTTTAGATGTTGGCCACAGATGGGAACACCTATTGAAATGTGT
CTGAAGAAGATTAATAGGGCTTGTCACTGTTGGGAAAGCACTGCTTTGCTGTAAATTTCT
ACCAGCACAAGATGAATTACCGATGAATGCTCACTTATCAACCCCATCACTATCGTTCGA
CACTAAATCAAATTGAGAAGTTATCTGCAATCAGAAAATTTCTTTTTAAAATAGACATAC
ACCTTTAGGCCCCAACTCTTTAATATTCCTACACAGAAAACAAATCCCCATCACAAGATG
TTTCTTTAGCTTAAACAAAATTGTATCAATAATGTATCTGTTTTTAAGTTCAAGGCAATG
GACAAATACAATGGACAGCTGGTCAATGGAGAAATTTGATGATATTTTAACAAGGGTCTG
AAGGCTTCTTGGAAGCTCCCATTTAATATTTCACAAAATGTGTGTTCTTTACTTGGAGAT
ATTTCTCTCCCTGAGAATTTTGCTTTGGAAAGCAAAAAAGAGAGTGTGCTCGCTGTTTTC
CTGTTCNTAACCCAGTCCCTGTGACCTAATCATCATCTAATTCCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGAAAATCCAGGCAAGAAAGGCTAATTGAATGAAGAGAGAGAATTAAGTTAAAAAATA
GAGTACAATCTAGTATCACATTTTCACTAGTGTAACTTGAAATGAAGGTGTCTTCAAGTC
GCCAGTGATGCCAGAGTGTTTAGATGTTGGCCACAGATGGGAACACCTATTGAAATGTGT
CTGAAGAAGATTAATAGGGCTTGTCACTGTTGGGAAAGCACTGCTTTGCTGTAAATTTCT
ACCAGCACAAGATGAATTACCGATGAATGCTCACTTATCAACCCCATCACTATCGTTCGA
CACTAAATCAAATTGAGAAGTTATCTGCAATCAGAAAATTTCTTTTTAAAATAGACATAC
ACCTTTAGGCCCCAACTCTTTAATATTCCTACACAGAAAACAAATCCCCATCACAAGATG
TTTCTTTAGCTTAAACAAAATTGTATCAATAATGTATCTGTTTTTAAGTTCAAGGCAATG
GACAAATACAATGGACAGCTGGTCAATGGAGAAATTTGATGATATTTTAACAAGGGTCTG
AAGGCTTCTTGGAAGCTCCCATTTAATATTTCACAAAATGTGTGTTCTTTACTTGGAGAT
ATTTCTCTCCCTGAGAATTTTGCTTTGGAAAGCAAAAAAGAGAGTGTGCTCGCTGTTTTC
CTGTTCNTAACCCAGTCCCTGTGACCTAATCATCATCTAATTCCGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               75-194, + strand, RNAz p=0.988144

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               75-194, + strand, RNAz p=0.988144

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-704, gnl|bosTau2|chr21 (5730698-5730015)
               

               
               1-704, gnl|Hg17|chr15 (94659947-94659259)
               

               
               1-704, gnl|Mm7|chr7 (66233018-66233705)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-704, gnl|bosTau2|chr21 (5730698-5730015)
               

               
               1-704, gnl|Hg17|chr15 (94659947-94659259)
               

               
               1-704, gnl|Mm7|chr7 (66233018-66233705)

	1-704, gnl\|bosTau2\|chr21 (5730698-5730015)
	1-704, gnl\|Hg17\|chr15 (94659947-94659259)
	1-704, gnl\|Mm7\|chr7 (66233018-66233705)