Non-Coding RNA Search

Ova1-OVRM10218D03

Sequence:


               
               AATTTTCAAGGAGGAAGGGGTTTTCTGACTGGAAGGAGTTTTTCCTCTCCCATCTCCCGT
AGTTCAGCAAATCAAAGTCAGATGTTCATTCTTGAGTGGCAATCAGATGGATTTGGATTT
TTTTTTTTTTTTTCACTTTTCTTTAAACTGGTACATCTGGGTGAACTTAGGTTTGTGTAT
CTTGGCATCAGGGCCTGTCTAGTAATAGAAGACAAACTGTCTGACTTGTTTTGGCTGCCT
TTTGGGACCCATTTCACCATACCCTTCCTTTTTATGTTTGAAGGGCTGGTCAAGAGAAAG
AAAGCAAATATTAAAGACAGTGTGTACAATTTGTGGTTTAAAGTCAGGTGAGAGATAATT
ATGGCCTTTGCAGCTGATGACCTGAGGACCATCATTTGATGACTTGGGGATTAGCAGTTT
GGAGGTGACACGTTTGAAGAGGGTTACATAAGGAGGGAAAGACAGGGAAAAGGAAGTTTA
GGGAAAGGCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTTCAAGGAGGAAGGGGTTTTCTGACTGGAAGGAGTTTTTCCTCTCCCATCTCCCGT
AGTTCAGCAAATCAAAGTCAGATGTTCATTCTTGAGTGGCAATCAGATGGATTTGGATTT
TTTTTTTTTTTTTCACTTTTCTTTAAACTGGTACATCTGGGTGAACTTAGGTTTGTGTAT
CTTGGCATCAGGGCCTGTCTAGTAATAGAAGACAAACTGTCTGACTTGTTTTGGCTGCCT
TTTGGGACCCATTTCACCATACCCTTCCTTTTTATGTTTGAAGGGCTGGTCAAGAGAAAG
AAAGCAAATATTAAAGACAGTGTGTACAATTTGTGGTTTAAAGTCAGGTGAGAGATAATT
ATGGCCTTTGCAGCTGATGACCTGAGGACCATCATTTGATGACTTGGGGATTAGCAGTTT
GGAGGTGACACGTTTGAAGAGGGTTACATAAGGAGGGAAAGACAGGGAAAAGGAAGTTTA
GGGAAAGGCTAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               76-186, + strand, RNAz p=0.96611

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               76-186, + strand, RNAz p=0.96611

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               86-197, + strand, RNAmicro p=0.983371

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               86-197, + strand, RNAmicro p=0.983371

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-490, gnl|bosTau2|chr3 (10148860-10148353)
               

               
               3-490, gnl|Hg17|chr1 (153919799-153919301)
               

               
               3-490, gnl|Mm7|chr3 (87640498-87640980)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-490, gnl|bosTau2|chr3 (10148860-10148353)
               

               
               3-490, gnl|Hg17|chr1 (153919799-153919301)
               

               
               3-490, gnl|Mm7|chr3 (87640498-87640980)

	3-490, gnl\|bosTau2\|chr3 (10148860-10148353)
	3-490, gnl\|Hg17\|chr1 (153919799-153919301)
	3-490, gnl\|Mm7\|chr3 (87640498-87640980)