Non-Coding RNA Search

Ova1-OVRM10221A04

Sequence:


               
               GAACATTAAACTGCTTTAGCTCTGGGGATGGTGTTGAGTGTTTGCTGTATCCTGTGATGC
AGGACATGGGGTAGCTGCTGGGATTTAGTTAGTCTATCTAGAGCTAAGGATGCTTTGGGC
TGGGTTTCATTGCTTGGGCTCCTATATTTGACTCTTACTTTGCCCACTTTTTTGTTTCTT
TTGGTGAAATACTTTGCCAAGGTACTATTTTGTAAGATAAAATCCTTTTAAGTACCTTGC
AGCTTCGGTAAACTTCTGTGGTGTGGTCCTTTTTGCTAATGCCAAGTGAAGGTGCATGAA
ACCCTCTGTTCTGAAATTGGAGTTGAAAGCAGCTTACTCTCCTCAGTAAAGACAGCTGGC
TGTTTTATATCTCCAACTTTAAGTCTTTTCAGGAATTTTCTTTTACAATTCATGGTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACATTAAACTGCTTTAGCTCTGGGGATGGTGTTGAGTGTTTGCTGTATCCTGTGATGC
AGGACATGGGGTAGCTGCTGGGATTTAGTTAGTCTATCTAGAGCTAAGGATGCTTTGGGC
TGGGTTTCATTGCTTGGGCTCCTATATTTGACTCTTACTTTGCCCACTTTTTTGTTTCTT
TTGGTGAAATACTTTGCCAAGGTACTATTTTGTAAGATAAAATCCTTTTAAGTACCTTGC
AGCTTCGGTAAACTTCTGTGGTGTGGTCCTTTTTGCTAATGCCAAGTGAAGGTGCATGAA
ACCCTCTGTTCTGAAATTGGAGTTGAAAGCAGCTTACTCTCCTCAGTAAAGACAGCTGGC
TGTTTTATATCTCCAACTTTAAGTCTTTTCAGGAATTTTCTTTTACAATTCATGGTA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               4-123, - strand, RNAz p=0.544164
               

               
               159-271, - strand, RNAz p=0.643596
               

               
               292-404, - strand, RNAz p=0.761602

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               4-123, - strand, RNAz p=0.544164
               

               
               159-271, - strand, RNAz p=0.643596
               

               
               292-404, - strand, RNAz p=0.761602

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               4-404, gnl|bosTau2|chr10 (17050665-17050294)
               

               
               4-404, gnl|canFam2|chr30 (12194564-12194822)
               

               
               4-404, gnl|dasNov1|scaffold_41816 (1171-887)
               

               
               4-404, gnl|echTel1|scaffold_56580 (1129-858)
               

               
               4-404, gnl|fr1|chrUn (181886616-181886363)
               

               
               4-404, gnl|galGal2|chr5 (22852506-22852723)
               

               
               4-404, gnl|hg17|chr15 (40271106-40271384)
               

               
               4-404, gnl|Hg17|chr15 (40271542-40271153)
               

               
               4-404, gnl|loxAfr1|scaffold_11334 (59793-59500)
               

               
               4-404, gnl|mm7|chr2 (120087295-120087550)
               

               
               4-404, gnl|Mm7|chr2 (120087692-120087346)
               

               
               4-404, gnl|monDom2|scaffold_53 (12360856-12360578)
               

               
               4-404, gnl|panTro1|chr16 (40246043-40246321)
               

               
               4-404, gnl|rheMac2|chr7 (20603154-20603432)
               

               
               4-404, gnl|rn3|chr3 (106732285-106732547)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-404, gnl|bosTau2|chr10 (17050665-17050294)
               

               
               4-404, gnl|canFam2|chr30 (12194564-12194822)
               

               
               4-404, gnl|dasNov1|scaffold_41816 (1171-887)
               

               
               4-404, gnl|echTel1|scaffold_56580 (1129-858)
               

               
               4-404, gnl|fr1|chrUn (181886616-181886363)
               

               
               4-404, gnl|galGal2|chr5 (22852506-22852723)
               

               
               4-404, gnl|hg17|chr15 (40271106-40271384)
               

               
               4-404, gnl|Hg17|chr15 (40271542-40271153)
               

               
               4-404, gnl|loxAfr1|scaffold_11334 (59793-59500)
               

               
               4-404, gnl|mm7|chr2 (120087295-120087550)
               

               
               4-404, gnl|Mm7|chr2 (120087692-120087346)
               

               
               4-404, gnl|monDom2|scaffold_53 (12360856-12360578)
               

               
               4-404, gnl|panTro1|chr16 (40246043-40246321)
               

               
               4-404, gnl|rheMac2|chr7 (20603154-20603432)
               

               
               4-404, gnl|rn3|chr3 (106732285-106732547)

	4-123, - strand, RNAz p=0.544164
	159-271, - strand, RNAz p=0.643596
	292-404, - strand, RNAz p=0.761602

	4-404, gnl\|bosTau2\|chr10 (17050665-17050294)
	4-404, gnl\|canFam2\|chr30 (12194564-12194822)
	4-404, gnl\|dasNov1\|scaffold_41816 (1171-887)
	4-404, gnl\|echTel1\|scaffold_56580 (1129-858)
	4-404, gnl\|fr1\|chrUn (181886616-181886363)
	4-404, gnl\|galGal2\|chr5 (22852506-22852723)
	4-404, gnl\|hg17\|chr15 (40271106-40271384)
	4-404, gnl\|Hg17\|chr15 (40271542-40271153)
	4-404, gnl\|loxAfr1\|scaffold_11334 (59793-59500)
	4-404, gnl\|mm7\|chr2 (120087295-120087550)
	4-404, gnl\|Mm7\|chr2 (120087692-120087346)
	4-404, gnl\|monDom2\|scaffold_53 (12360856-12360578)
	4-404, gnl\|panTro1\|chr16 (40246043-40246321)
	4-404, gnl\|rheMac2\|chr7 (20603154-20603432)
	4-404, gnl\|rn3\|chr3 (106732285-106732547)