Non-Coding RNA Search

Ova1-OVRM1C110179

Sequence:


               
               GCCTTTTCCAAATATGAATTTGGATGCAGTACAGTACGTCCTCTAAGAAAATGAGGAGAA
GGGAAAACCAGTAACTCTATAACTGGAGATACTTGGGGAACATTTCAAAATGGGGACGCT
CTAACCTGTAGTATTTGGAGTCTCCCCTAAGCTTGCGTCTCTGTGGTGTGCAGAGGCCAG
TCTTGTTTCTCCGGACTGAGCACCCCCTTCGCTTAGGAAAACCATAGAGCAGCCTCTGTC
CTGCGGGTGTTGCACGCTGACTTGCTCCAGACAGTCTTGAATGTGACCTGGCAGCCAGTG
CAGTTTCCTGCTGACGTGGCCTCCCACAACTGAGCCGAACAGAGCCGCTCACTGTGCTGA
GGGAGGAGCGGCCCAGGGCATGAATCACCAGTGGGATAAGGAACAAATTAAGAGGGGAAA
GCGCCTAGCTGTTCAGGTTTCCTTCTAGATATACTTAAAAGACACCTTTTTTTTATAGGA
AGGGAGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTTTTCCAAATATGAATTTGGATGCAGTACAGTACGTCCTCTAAGAAAATGAGGAGAA
GGGAAAACCAGTAACTCTATAACTGGAGATACTTGGGGAACATTTCAAAATGGGGACGCT
CTAACCTGTAGTATTTGGAGTCTCCCCTAAGCTTGCGTCTCTGTGGTGTGCAGAGGCCAG
TCTTGTTTCTCCGGACTGAGCACCCCCTTCGCTTAGGAAAACCATAGAGCAGCCTCTGTC
CTGCGGGTGTTGCACGCTGACTTGCTCCAGACAGTCTTGAATGTGACCTGGCAGCCAGTG
CAGTTTCCTGCTGACGTGGCCTCCCACAACTGAGCCGAACAGAGCCGCTCACTGTGCTGA
GGGAGGAGCGGCCCAGGGCATGAATCACCAGTGGGATAAGGAACAAATTAAGAGGGGAAA
GCGCCTAGCTGTTCAGGTTTCCTTCTAGATATACTTAAAAGACACCTTTTTTTTATAGGA
AGGGAGGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-353, + strand, RNAz p=0.968003
               

               
               152-252, - strand, RNAz p=0.742208

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-353, + strand, RNAz p=0.968003
               

               
               152-252, - strand, RNAz p=0.742208

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               163-320, + strand, RNAmicro p=0.999968
               

               
               146-267, - strand, RNAmicro p=0.989404

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               163-320, + strand, RNAmicro p=0.999968
               

               
               146-267, - strand, RNAmicro p=0.989404

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-489, gnl|bosTau2|chr1 (64336155-64335665)
               

               
               1-489, gnl|canFam2|chr34 (39422801-39423334)
               

               
               1-489, gnl|dasNov1|scaffold_213 (9577-10160)
               

               
               1-489, gnl|hg17|chr3 (173353510-173354089)
               

               
               1-489, gnl|Hg17|chr3 (173353660-173354148)
               

               
               1-489, gnl|mm7|chr3 (27423750-27423206)
               

               
               1-489, gnl|Mm7|chr3 (27423597-27423145)
               

               
               1-489, gnl|oryCun1|scaffold_209919 (177278-176706)
               

               
               1-489, gnl|panTro1|chr2 (176881477-176882056)
               

               
               1-489, gnl|rheMac2|chr2 (114883308-114882729)
               

               
               1-489, gnl|rn3|chr2 (113469382-113468836)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-489, gnl|bosTau2|chr1 (64336155-64335665)
               

               
               1-489, gnl|canFam2|chr34 (39422801-39423334)
               

               
               1-489, gnl|dasNov1|scaffold_213 (9577-10160)
               

               
               1-489, gnl|hg17|chr3 (173353510-173354089)
               

               
               1-489, gnl|Hg17|chr3 (173353660-173354148)
               

               
               1-489, gnl|mm7|chr3 (27423750-27423206)
               

               
               1-489, gnl|Mm7|chr3 (27423597-27423145)
               

               
               1-489, gnl|oryCun1|scaffold_209919 (177278-176706)
               

               
               1-489, gnl|panTro1|chr2 (176881477-176882056)
               

               
               1-489, gnl|rheMac2|chr2 (114883308-114882729)
               

               
               1-489, gnl|rn3|chr2 (113469382-113468836)

	1-353, + strand, RNAz p=0.968003
	152-252, - strand, RNAz p=0.742208

	163-320, + strand, RNAmicro p=0.999968
	146-267, - strand, RNAmicro p=0.989404

	1-489, gnl\|bosTau2\|chr1 (64336155-64335665)
	1-489, gnl\|canFam2\|chr34 (39422801-39423334)
	1-489, gnl\|dasNov1\|scaffold_213 (9577-10160)
	1-489, gnl\|hg17\|chr3 (173353510-173354089)
	1-489, gnl\|Hg17\|chr3 (173353660-173354148)
	1-489, gnl\|mm7\|chr3 (27423750-27423206)
	1-489, gnl\|Mm7\|chr3 (27423597-27423145)
	1-489, gnl\|oryCun1\|scaffold_209919 (177278-176706)
	1-489, gnl\|panTro1\|chr2 (176881477-176882056)
	1-489, gnl\|rheMac2\|chr2 (114883308-114882729)
	1-489, gnl\|rn3\|chr2 (113469382-113468836)