Non-Coding RNA Search

Ova2-C0003104_I17

Sequence:


               
               CCGCGGCTCGAGCTTGTTTCAGGCAGTGGACGACCCTGGGGGGACCCGCGCCCATCAGTC
CGGAGCGCGAGTGCCCGCTAGGGGGTACCCGGCCAGATTGAAGTCATGGCCATTCTTTTT
GCCGTTGTTGCCAGGGGAACCACTATTCTTGCCAAACATGCTTGGTGTGGAGGAAACTTC
CTGGAGGTGACAGAGCAGATTCTGGCTAAGATACCTTCTGAAAATAATAAACTAACTTAC
TCTCATGGCAATTATTTGTTTCACTACATCTGCCAGGACAGGATTGTGTATCTTTGCATC
ACGGATGACGATTTCGAGCGTTCTCGGGCCTTCGGTTTTTTGAATGAAGTGAAGAAGAGG
TTCCAGACCACATATGGCTCGAGAGCGCAGACCGCACTTCCCTATGCCATGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGCTCGAGCTTGTTTCAGGCAGTGGACGACCCTGGGGGGACCCGCGCCCATCAGTC
CGGAGCGCGAGTGCCCGCTAGGGGGTACCCGGCCAGATTGAAGTCATGGCCATTCTTTTT
GCCGTTGTTGCCAGGGGAACCACTATTCTTGCCAAACATGCTTGGTGTGGAGGAAACTTC
CTGGAGGTGACAGAGCAGATTCTGGCTAAGATACCTTCTGAAAATAATAAACTAACTTAC
TCTCATGGCAATTATTTGTTTCACTACATCTGCCAGGACAGGATTGTGTATCTTTGCATC
ACGGATGACGATTTCGAGCGTTCTCGGGCCTTCGGTTTTTTGAATGAAGTGAAGAAGAGG
TTCCAGACCACATATGGCTCGAGAGCGCAGACCGCACTTCCCTATGCCATGAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27464884|gb|AAO16235.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27464884|gb|AAO16235.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               95-213, + strand, RNAz p=0.91742

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               95-213, + strand, RNAz p=0.91742

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AJ295938, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AJ295938, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               95-251, gnl|bosTau2|chrX (13036908-13037064)
               

               
               95-251, gnl|Hg17|chrX (154682823-154682979)
               

               
               95-251, gnl|Mm7|chrUn_random (11009636-11009480)
               


               
               310-413, gnl|bosTau2|chrX (13048807-13048910)
               

               
               310-413, gnl|Hg17|chrX (154691480-154691583)
               

               
               310-413, gnl|Mm7|chrUn_random (11006163-11006060)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               95-251, gnl|bosTau2|chrX (13036908-13037064)
               

               
               95-251, gnl|Hg17|chrX (154682823-154682979)
               

               
               95-251, gnl|Mm7|chrUn_random (11009636-11009480)
               


               
               310-413, gnl|bosTau2|chrX (13048807-13048910)
               

               
               310-413, gnl|Hg17|chrX (154691480-154691583)
               

               
               310-413, gnl|Mm7|chrUn_random (11006163-11006060)

	95-251, gnl\|bosTau2\|chrX (13036908-13037064)
	95-251, gnl\|Hg17\|chrX (154682823-154682979)
	95-251, gnl\|Mm7\|chrUn_random (11009636-11009480)

	310-413, gnl\|bosTau2\|chrX (13048807-13048910)
	310-413, gnl\|Hg17\|chrX (154691480-154691583)
	310-413, gnl\|Mm7\|chrUn_random (11006163-11006060)