Non-Coding RNA Search

Ova2-C0003105_A05

Sequence:


               
               CAGCACCTGTGTCCTGGCTAGCAAGGGCTTCTCCTGGGGTCGCCACTACTGGGAAGTGGT
GGTGGGGAGCAAGAGTGACTGGCGCTTGGGGGTCATCAAGGGCACCGCCAGCCGCAAAGG
CAAGCTGAGCAAGTCCCCAGAACATGGGGTATGGCTAATAGGCCTGAAAGAGGGTCGGCT
GTATGAGGCTTTTGGCTGCCCACGGCTGCCACTGCCCGTGGCTGGCCACCCTCATCGCAT
TGGCGTCTACCTACACTATGAGCAGGGTGAGCTCACGTTCTTTGATGCTGACCGTCCTGA
TGATCTTCGGGCACTCTACACTTTCCAGGCTGACTTCCAGGGCAAGCTGTACCCTATCCT
GGACACATGCTGGCATGAGAGGGGCAGCAACTCACTGCCCATGGTACTGCCCCCACCCAG
TGCGCCTGGCCACCTCACACGTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCACCTGTGTCCTGGCTAGCAAGGGCTTCTCCTGGGGTCGCCACTACTGGGAAGTGGT
GGTGGGGAGCAAGAGTGACTGGCGCTTGGGGGTCATCAAGGGCACCGCCAGCCGCAAAGG
CAAGCTGAGCAAGTCCCCAGAACATGGGGTATGGCTAATAGGCCTGAAAGAGGGTCGGCT
GTATGAGGCTTTTGGCTGCCCACGGCTGCCACTGCCCGTGGCTGGCCACCCTCATCGCAT
TGGCGTCTACCTACACTATGAGCAGGGTGAGCTCACGTTCTTTGATGCTGACCGTCCTGA
TGATCTTCGGGCACTCTACACTTTCCAGGCTGACTTCCAGGGCAAGCTGTACCCTATCCT
GGACACATGCTGGCATGAGAGGGGCAGCAACTCACTGCCCATGGTACTGCCCCCACCCAG
TGCGCCTGGCCACCTCACACGTGCAC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-159, - strand, RNAz p=0.912991
               

               
               318-436, - strand, RNAz p=0.73803

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.912991
               

               
               318-436, - strand, RNAz p=0.73803

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               7-107, + strand, RNAmicro p=0.999326

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               7-107, + strand, RNAmicro p=0.999326

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-436, gnl|bosTau2|chr25 (28284700-28285135)
               

               
               1-436, gnl|Hg17|chr7 (72172030-72171595)
               

               
               1-436, gnl|Mm7|chr5 (134338481-134338916)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-436, gnl|bosTau2|chr25 (28284700-28285135)
               

               
               1-436, gnl|Hg17|chr7 (72172030-72171595)
               

               
               1-436, gnl|Mm7|chr5 (134338481-134338916)

	40-159, - strand, RNAz p=0.912991
	318-436, - strand, RNAz p=0.73803

	1-436, gnl\|bosTau2\|chr25 (28284700-28285135)
	1-436, gnl\|Hg17\|chr7 (72172030-72171595)
	1-436, gnl\|Mm7\|chr5 (134338481-134338916)