Non-Coding RNA Search

Ova2-C0003105_E11

Sequence:


               
               GAGTGCAAGGTTGGGACAAAGACCATCGACTCTGTCCAAGCCACACAGGACCTAGTGGGC
TGCACCCATGTGGAGGGGAGCCTCATCCTCAACCTTCGACAAGGCTGTCAGTATTCTTCC
TGGTCACGCCCTTGGCCACGCCCTCCGTGGTCACACCCTCCCTCCCTTGCATGGTTCCCC
CTCATCCCTCCGTTCCTACCTCCTCGTTTGTCCCTCCAGCTCCCTTCCCTGTGGACCCAT
CACCTTCCCTGGCCTGCTCCACTCCTATCTTTCTCATCCCCAGACAATCTGGAGCCAGAG
CTTCAACGCAACCTGGGGCTGGTGGAGACCATCACCGGCTTCCTCAAAATCAAGCACTCT
TTTGCACTCGTGACCCTAGGATTTTTCAGAACCTCAAACTAATCCCGGGAGATTCCATGG
TGGATGGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGCAAGGTTGGGACAAAGACCATCGACTCTGTCCAAGCCACACAGGACCTAGTGGGC
TGCACCCATGTGGAGGGGAGCCTCATCCTCAACCTTCGACAAGGCTGTCAGTATTCTTCC
TGGTCACGCCCTTGGCCACGCCCTCCGTGGTCACACCCTCCCTCCCTTGCATGGTTCCCC
CTCATCCCTCCGTTCCTACCTCCTCGTTTGTCCCTCCAGCTCCCTTCCCTGTGGACCCAT
CACCTTCCCTGGCCTGCTCCACTCCTATCTTTCTCATCCCCAGACAATCTGGAGCCAGAG
CTTCAACGCAACCTGGGGCTGGTGGAGACCATCACCGGCTTCCTCAAAATCAAGCACTCT
TTTGCACTCGTGACCCTAGGATTTTTCAGAACCTCAAACTAATCCCGGGAGATTCCATGG
TGGATGGGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               210-363, - strand, RNAz p=0.937094

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               210-363, - strand, RNAz p=0.937094

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               236-348, - strand, RNAmicro p=0.99071

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               236-348, - strand, RNAmicro p=0.99071

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-429, gnl|bosTau2|chr3 (9881148-9880706)
               

               
               1-429, gnl|Hg17|chr1 (153634616-153634153)
               

               
               1-429, gnl|Mm7|chr3 (87916607-87917020)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-429, gnl|bosTau2|chr3 (9881148-9880706)
               

               
               1-429, gnl|Hg17|chr1 (153634616-153634153)
               

               
               1-429, gnl|Mm7|chr3 (87916607-87917020)

	1-429, gnl\|bosTau2\|chr3 (9881148-9880706)
	1-429, gnl\|Hg17\|chr1 (153634616-153634153)
	1-429, gnl\|Mm7\|chr3 (87916607-87917020)