Non-Coding RNA Search

Ova2-C0003260_M04

Sequence:


               
               GTTCTGTTACCAAAGCAGAGCACTGTCGCAAAACTGCCTGCCGTCCATCCAGCCCGGCTA
AGGAGGCTGTCCTTCCTGCCCACCCCACGTGCTCAGGGTTCTGAGGATGTGGTGCAGGCA
TTCATCAGTGAGATTGGGATCGAAGCATCAGACCTGTCCAGTCTGTTAAGCAGTTTGAGA
AATCAGAAGCCAAAAAGGAGTGTCCTCTCCCGGCTCCTGCTGACAGCGTGGCTGTAGGAA
ACTCAGGCAGCATTGACACTCCCCAGGAGAAGAAACCCCTAGACCGGTTACACGCCCCAG
AACTGGCCAACGTGGCAGGGCTCACCCCGCCAGCTACCCCTCCCCACCAGTTATGGAAAC
CCCTGGCTGCTGTCTCACTGTTGGCCAAAGCCAAATCTCCTAAATCTACTGCCCAAGAGG
GAACCCTGAAGCCTGAAGGAATTACAGAGGCCAAACCTCCAGCTGCAGCCTGCCTCCAAG
AAGGGGTCCGTGGCCCTAGTCCAGTCCATGTGGGCTCTGGGGACCATGACTATTGTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTGTTACCAAAGCAGAGCACTGTCGCAAAACTGCCTGCCGTCCATCCAGCCCGGCTA
AGGAGGCTGTCCTTCCTGCCCACCCCACGTGCTCAGGGTTCTGAGGATGTGGTGCAGGCA
TTCATCAGTGAGATTGGGATCGAAGCATCAGACCTGTCCAGTCTGTTAAGCAGTTTGAGA
AATCAGAAGCCAAAAAGGAGTGTCCTCTCCCGGCTCCTGCTGACAGCGTGGCTGTAGGAA
ACTCAGGCAGCATTGACACTCCCCAGGAGAAGAAACCCCTAGACCGGTTACACGCCCCAG
AACTGGCCAACGTGGCAGGGCTCACCCCGCCAGCTACCCCTCCCCACCAGTTATGGAAAC
CCCTGGCTGCTGTCTCACTGTTGGCCAAAGCCAAATCTCCTAAATCTACTGCCCAAGAGG
GAACCCTGAAGCCTGAAGGAATTACAGAGGCCAAACCTCCAGCTGCAGCCTGCCTCCAAG
AAGGGGTCCGTGGCCCTAGTCCAGTCCATGTGGGCTCTGGGGACCATGACTATTGTGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               316-434, - strand, RNAz p=0.870938

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-434, - strand, RNAz p=0.870938

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

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               9-137, gnl|bosTau2|chr26 (15304460-15304588)
               

               
               9-137, gnl|canFam2|chr28 (17678316-17678542)
               

               
               9-137, gnl|dasNov1|scaffold_105830 (2966-3186)
               

               
               9-137, gnl|echTel1|scaffold_296342 (7280-7497)
               

               
               9-137, gnl|hg17|chr10 (103891511-103891731)
               

               
               9-137, gnl|Hg17|chr10 (103891624-103891752)
               

               
               9-137, gnl|loxAfr1|scaffold_12349 (25793-25998)
               

               
               9-137, gnl|mm7|chr19 (45961874-45962094)
               

               
               9-137, gnl|Mm7|chr19 (45961987-45962115)
               

               
               9-137, gnl|monDom2|scaffold_14 (61286554-61286292)
               

               
               9-137, gnl|oryCun1|scaffold_209820 (33714-33925)
               

               
               9-137, gnl|panTro1|chr8 (105651850-105652070)
               

               
               9-137, gnl|rheMac2|chr9 (101799201-101799421)
               

               
               9-137, gnl|rn3|chr1 (251547643-251547863)
               


               
               316-538, gnl|bosTau2|chr26 (15307611-15307833)
               

               
               316-538, gnl|Hg17|chr10 (103896416-103896638)
               

               
               316-538, gnl|Mm7|chr19 (45965670-45965892)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-137, gnl|bosTau2|chr26 (15304460-15304588)
               

               
               9-137, gnl|canFam2|chr28 (17678316-17678542)
               

               
               9-137, gnl|dasNov1|scaffold_105830 (2966-3186)
               

               
               9-137, gnl|echTel1|scaffold_296342 (7280-7497)
               

               
               9-137, gnl|hg17|chr10 (103891511-103891731)
               

               
               9-137, gnl|Hg17|chr10 (103891624-103891752)
               

               
               9-137, gnl|loxAfr1|scaffold_12349 (25793-25998)
               

               
               9-137, gnl|mm7|chr19 (45961874-45962094)
               

               
               9-137, gnl|Mm7|chr19 (45961987-45962115)
               

               
               9-137, gnl|monDom2|scaffold_14 (61286554-61286292)
               

               
               9-137, gnl|oryCun1|scaffold_209820 (33714-33925)
               

               
               9-137, gnl|panTro1|chr8 (105651850-105652070)
               

               
               9-137, gnl|rheMac2|chr9 (101799201-101799421)
               

               
               9-137, gnl|rn3|chr1 (251547643-251547863)
               


               
               316-538, gnl|bosTau2|chr26 (15307611-15307833)
               

               
               316-538, gnl|Hg17|chr10 (103896416-103896638)
               

               
               316-538, gnl|Mm7|chr19 (45965670-45965892)

	9-137, gnl\|bosTau2\|chr26 (15304460-15304588)
	9-137, gnl\|canFam2\|chr28 (17678316-17678542)
	9-137, gnl\|dasNov1\|scaffold_105830 (2966-3186)
	9-137, gnl\|echTel1\|scaffold_296342 (7280-7497)
	9-137, gnl\|hg17\|chr10 (103891511-103891731)
	9-137, gnl\|Hg17\|chr10 (103891624-103891752)
	9-137, gnl\|loxAfr1\|scaffold_12349 (25793-25998)
	9-137, gnl\|mm7\|chr19 (45961874-45962094)
	9-137, gnl\|Mm7\|chr19 (45961987-45962115)
	9-137, gnl\|monDom2\|scaffold_14 (61286554-61286292)
	9-137, gnl\|oryCun1\|scaffold_209820 (33714-33925)
	9-137, gnl\|panTro1\|chr8 (105651850-105652070)
	9-137, gnl\|rheMac2\|chr9 (101799201-101799421)
	9-137, gnl\|rn3\|chr1 (251547643-251547863)

	316-538, gnl\|bosTau2\|chr26 (15307611-15307833)
	316-538, gnl\|Hg17\|chr10 (103896416-103896638)
	316-538, gnl\|Mm7\|chr19 (45965670-45965892)