Non-Coding RNA Search

Ova2-C0003260_P03

Sequence:


               
               GGGAAATGGGGACAGTTTTCTGTTGGATTTAAGATATATCATATTGAGCCTGTTAATTTA
GGGACTTGAGTTGTTTTTATTTTTTATGACTTTAATGGCCCTCAGATCCATCAAGATGTG
AAACTCGCAAGTTTGGTGTGCAGAGAAGGTACATGGGTTTCCTTTGCTCTCATCTATACT
CTCTTTCCTGCAGTTATTTTCTTTGCCACAAGCTAGCCAGCAAAGCACCTCTGCCAGAAC
CATTAAGCTACAAGAGACACGAGAATATTTTGGTTTGAATTTTGCTGCTGATGTAGAAGA
ATCTGTTTTTCATTGCTTACTTTGAGTTCTTTCTTCACTTCCACTTAACCCTTCTAGCTG
CCACCTTCTGCCTTCATCATTGGGCTTTCTAGATGGCCACCCAGAAACAGGCTTTAGCCA
TGCCTTATATGAGCAGATTAGATGTTTGCAATCCAAACTATTTCTTCCCAACAGGAAGAC
TCTAAGCAAGTAGTCAATGTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGAAATGGGGACAGTTTTCTGTTGGATTTAAGATATATCATATTGAGCCTGTTAATTTA
GGGACTTGAGTTGTTTTTATTTTTTATGACTTTAATGGCCCTCAGATCCATCAAGATGTG
AAACTCGCAAGTTTGGTGTGCAGAGAAGGTACATGGGTTTCCTTTGCTCTCATCTATACT
CTCTTTCCTGCAGTTATTTTCTTTGCCACAAGCTAGCCAGCAAAGCACCTCTGCCAGAAC
CATTAAGCTACAAGAGACACGAGAATATTTTGGTTTGAATTTTGCTGCTGATGTAGAAGA
ATCTGTTTTTCATTGCTTACTTTGAGTTCTTTCTTCACTTCCACTTAACCCTTCTAGCTG
CCACCTTCTGCCTTCATCATTGGGCTTTCTAGATGGCCACCCAGAAACAGGCTTTAGCCA
TGCCTTATATGAGCAGATTAGATGTTTGCAATCCAAACTATTTCTTCCCAACAGGAAGAC
TCTAAGCAAGTAGTCAATGTTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               140-251, + strand, RNAz p=0.967703

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               140-251, + strand, RNAz p=0.967703

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-372, gnl|bosTau2|chr19 (39134800-39134426)
               

               
               1-372, gnl|canFam2|chr7 (3630635-3630200)
               

               
               1-372, gnl|dasNov1|scaffold_20785 (12098-12533)
               

               
               1-372, gnl|echTel1|scaffold_313505 (48061-48504)
               

               
               1-372, gnl|hg17|chr1 (199143567-199144005)
               

               
               1-372, gnl|Hg17|chr1 (199143767-199144125)
               

               
               1-372, gnl|loxAfr1|scaffold_8210 (26612-27060)
               

               
               1-372, gnl|mm7|chr1 (134762400-134761963)
               

               
               1-372, gnl|Mm7|chr1 (134762201-134761824)
               

               
               1-372, gnl|oryCun1|scaffold_175096 (40113-40538)
               

               
               1-372, gnl|panTro1|chr1 (181925426-181925864)
               

               
               1-372, gnl|rheMac2|chr1 (168057208-168056775)
               

               
               1-372, gnl|rn3|chr13 (47850082-47849652)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-372, gnl|bosTau2|chr19 (39134800-39134426)
               

               
               1-372, gnl|canFam2|chr7 (3630635-3630200)
               

               
               1-372, gnl|dasNov1|scaffold_20785 (12098-12533)
               

               
               1-372, gnl|echTel1|scaffold_313505 (48061-48504)
               

               
               1-372, gnl|hg17|chr1 (199143567-199144005)
               

               
               1-372, gnl|Hg17|chr1 (199143767-199144125)
               

               
               1-372, gnl|loxAfr1|scaffold_8210 (26612-27060)
               

               
               1-372, gnl|mm7|chr1 (134762400-134761963)
               

               
               1-372, gnl|Mm7|chr1 (134762201-134761824)
               

               
               1-372, gnl|oryCun1|scaffold_175096 (40113-40538)
               

               
               1-372, gnl|panTro1|chr1 (181925426-181925864)
               

               
               1-372, gnl|rheMac2|chr1 (168057208-168056775)
               

               
               1-372, gnl|rn3|chr13 (47850082-47849652)

	1-372, gnl\|bosTau2\|chr19 (39134800-39134426)
	1-372, gnl\|canFam2\|chr7 (3630635-3630200)
	1-372, gnl\|dasNov1\|scaffold_20785 (12098-12533)
	1-372, gnl\|echTel1\|scaffold_313505 (48061-48504)
	1-372, gnl\|hg17\|chr1 (199143567-199144005)
	1-372, gnl\|Hg17\|chr1 (199143767-199144125)
	1-372, gnl\|loxAfr1\|scaffold_8210 (26612-27060)
	1-372, gnl\|mm7\|chr1 (134762400-134761963)
	1-372, gnl\|Mm7\|chr1 (134762201-134761824)
	1-372, gnl\|oryCun1\|scaffold_175096 (40113-40538)
	1-372, gnl\|panTro1\|chr1 (181925426-181925864)
	1-372, gnl\|rheMac2\|chr1 (168057208-168056775)
	1-372, gnl\|rn3\|chr13 (47850082-47849652)