Non-Coding RNA Search

Ova2-C0003263_D17

Sequence:


               
               CTTCAACCTCAGCGGTGCTCTCAAGGCTGGCATCACTGCTGCCAAGGAGAAGTTCGACAC
CACGGTGAAAACCCTCAGCATTGACTCCATTCAGTTCCAGAGAGGTGGCAAGGAGTTCCT
GAAGAAGAAGCAGCTGAGCCCCGATGCGGTGGCCCAGCTGGCCTTCCAGATGGCCTTCCT
GAGACAGTATGGCCAGACGGTGGCTACCTATGAGTCCTGCAGCACTGCAGCCTTCAAGCA
CGGCCGCACAGAGACTATCCGCCCAGCCTCCATCTTTACTAAGAGATGCTCCGAGGCGTT
TGTCAGGGACCCCTCCAAGCACAGTGTGGGCGAGCTTCAGCACATGATGGCTGAGTGTTC
CAAATACCATGGCCAGCTGACCAAAGAAGCAGCGATGGGCCAGGGCTTTGACCGACACTT
GTATGCTCTGCGCTATCTGGCAACGGCCAGAGGAACTCACCTACCTGAGCTCTATCTGGA
TCCTGCATACCAGCAGATGAACCCACACATCCTGTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCAACCTCAGCGGTGCTCTCAAGGCTGGCATCACTGCTGCCAAGGAGAAGTTCGACAC
CACGGTGAAAACCCTCAGCATTGACTCCATTCAGTTCCAGAGAGGTGGCAAGGAGTTCCT
GAAGAAGAAGCAGCTGAGCCCCGATGCGGTGGCCCAGCTGGCCTTCCAGATGGCCTTCCT
GAGACAGTATGGCCAGACGGTGGCTACCTATGAGTCCTGCAGCACTGCAGCCTTCAAGCA
CGGCCGCACAGAGACTATCCGCCCAGCCTCCATCTTTACTAAGAGATGCTCCGAGGCGTT
TGTCAGGGACCCCTCCAAGCACAGTGTGGGCGAGCTTCAGCACATGATGGCTGAGTGTTC
CAAATACCATGGCCAGCTGACCAAAGAAGCAGCGATGGGCCAGGGCTTTGACCGACACTT
GTATGCTCTGCGCTATCTGGCAACGGCCAGAGGAACTCACCTACCTGAGCTCTATCTGGA
TCCTGCATACCAGCAGATGAACCCACACATCCTGTCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-239, - strand, RNAz p=0.660901

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.660901

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

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               1-399, gnl|bosTau2|chr12 (48413748-48413350)
               

               
               1-399, gnl|canFam2|chr5 (58728902-58728167)
               

               
               1-399, gnl|danRer3|chrUn (141057368-141058101)
               

               
               1-399, gnl|dasNov1|scaffold_7367 (45691-44956)
               

               
               1-399, gnl|echTel1|scaffold_287032 (43046-42311)
               

               
               1-399, gnl|fr1|chrUn (221932433-221931695)
               

               
               1-399, gnl|galGal2|chr8 (24882568-24883300)
               

               
               1-399, gnl|hg17|chr1 (53388286-53389021)
               

               
               1-399, gnl|Hg17|chr1 (53388615-53389013)
               

               
               1-399, gnl|loxAfr1|scaffold_15482 (22113-22848)
               

               
               1-399, gnl|mm7|chr4 (107284088-107283353)
               

               
               1-399, gnl|Mm7|chr4 (107283757-107283359)
               

               
               1-399, gnl|monDom2|scaffold_70 (338985-338253)
               

               
               1-399, gnl|oryCun1|scaffold_202384 (90066-89331)
               

               
               1-399, gnl|panTro1|chr1 (51632834-51633569)
               

               
               1-399, gnl|rheMac2|chr1 (56090037-56090772)
               

               
               1-399, gnl|rn3|chr5 (129015714-129014979)
               

               
               1-399, gnl|tetNig1|chrUn_random (49665795-49665066)
               

               
               1-399, gnl|xenTro1|scaffold_197 (663925-664657)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-399, gnl|bosTau2|chr12 (48413748-48413350)
               

               
               1-399, gnl|canFam2|chr5 (58728902-58728167)
               

               
               1-399, gnl|danRer3|chrUn (141057368-141058101)
               

               
               1-399, gnl|dasNov1|scaffold_7367 (45691-44956)
               

               
               1-399, gnl|echTel1|scaffold_287032 (43046-42311)
               

               
               1-399, gnl|fr1|chrUn (221932433-221931695)
               

               
               1-399, gnl|galGal2|chr8 (24882568-24883300)
               

               
               1-399, gnl|hg17|chr1 (53388286-53389021)
               

               
               1-399, gnl|Hg17|chr1 (53388615-53389013)
               

               
               1-399, gnl|loxAfr1|scaffold_15482 (22113-22848)
               

               
               1-399, gnl|mm7|chr4 (107284088-107283353)
               

               
               1-399, gnl|Mm7|chr4 (107283757-107283359)
               

               
               1-399, gnl|monDom2|scaffold_70 (338985-338253)
               

               
               1-399, gnl|oryCun1|scaffold_202384 (90066-89331)
               

               
               1-399, gnl|panTro1|chr1 (51632834-51633569)
               

               
               1-399, gnl|rheMac2|chr1 (56090037-56090772)
               

               
               1-399, gnl|rn3|chr5 (129015714-129014979)
               

               
               1-399, gnl|tetNig1|chrUn_random (49665795-49665066)
               

               
               1-399, gnl|xenTro1|scaffold_197 (663925-664657)

	1-399, gnl\|bosTau2\|chr12 (48413748-48413350)
	1-399, gnl\|canFam2\|chr5 (58728902-58728167)
	1-399, gnl\|danRer3\|chrUn (141057368-141058101)
	1-399, gnl\|dasNov1\|scaffold_7367 (45691-44956)
	1-399, gnl\|echTel1\|scaffold_287032 (43046-42311)
	1-399, gnl\|fr1\|chrUn (221932433-221931695)
	1-399, gnl\|galGal2\|chr8 (24882568-24883300)
	1-399, gnl\|hg17\|chr1 (53388286-53389021)
	1-399, gnl\|Hg17\|chr1 (53388615-53389013)
	1-399, gnl\|loxAfr1\|scaffold_15482 (22113-22848)
	1-399, gnl\|mm7\|chr4 (107284088-107283353)
	1-399, gnl\|Mm7\|chr4 (107283757-107283359)
	1-399, gnl\|monDom2\|scaffold_70 (338985-338253)
	1-399, gnl\|oryCun1\|scaffold_202384 (90066-89331)
	1-399, gnl\|panTro1\|chr1 (51632834-51633569)
	1-399, gnl\|rheMac2\|chr1 (56090037-56090772)
	1-399, gnl\|rn3\|chr5 (129015714-129014979)
	1-399, gnl\|tetNig1\|chrUn_random (49665795-49665066)
	1-399, gnl\|xenTro1\|scaffold_197 (663925-664657)