Non-Coding RNA Search

Ova2-C0003263_N18

Sequence:


               
               GGATGATGACGCGAGTAGAGATCTTGCGGAGCCGGAGCTACTCCCTGCGAGGACCGGGCT
GGAGTCCGTGGATGATGCCGCTGCCGCTGGGGAGCCACTTGCTGAAGACTCCAGTGTCGC
CAGACCGCCCGCAATGCCTGCCCGCATCCCAGCACTGGCCAGTCTGAGCCGCAGCCCTAC
CTCGCCACTGGTGCGCTTCCAGCTGCCCAATGTGCTGTTCGCCTATGCTCACACTCTCGC
CCTATATCATGGAGGGGACGACGACGCGCTACTCTCTGACTTCTGTGCTACTCTGCTCGA
TGTTTCTGGGGCCCTGGGAACCCAGCAAGTCTTTCACTCTACAGAGGAAGCCCTGCAGGC
CGCAGCCCACGTTCTGGAAGCGGGCGAGCACCCACCTGGGCCCCTGGGTACACGGGGTGC
TATGCAGGAAGTTGCCCGAATCCTTCTGGGCGAGGGTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATGATGACGCGAGTAGAGATCTTGCGGAGCCGGAGCTACTCCCTGCGAGGACCGGGCT
GGAGTCCGTGGATGATGCCGCTGCCGCTGGGGAGCCACTTGCTGAAGACTCCAGTGTCGC
CAGACCGCCCGCAATGCCTGCCCGCATCCCAGCACTGGCCAGTCTGAGCCGCAGCCCTAC
CTCGCCACTGGTGCGCTTCCAGCTGCCCAATGTGCTGTTCGCCTATGCTCACACTCTCGC
CCTATATCATGGAGGGGACGACGACGCGCTACTCTCTGACTTCTGTGCTACTCTGCTCGA
TGTTTCTGGGGCCCTGGGAACCCAGCAAGTCTTTCACTCTACAGAGGAAGCCCTGCAGGC
CGCAGCCCACGTTCTGGAAGCGGGCGAGCACCCACCTGGGCCCCTGGGTACACGGGGTGC
TATGCAGGAAGTTGCCCGAATCCTTCTGGGCGAGGGTCCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               249-357, - strand, RNAz p=0.938953

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-357, - strand, RNAz p=0.938953

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               306-402, + strand, RNAmicro p=0.992487

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               306-402, + strand, RNAmicro p=0.992487

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-459, gnl|bosTau2|chr29 (34240892-34240437)
               

               
               1-459, gnl|canFam2|chr18 (55104018-55103562)
               

               
               1-459, gnl|danRer3|chr10 (21869239-21869682)
               

               
               1-459, gnl|echTel1|scaffold_292923 (6279-5822)
               

               
               1-459, gnl|hg17|chr11 (64640625-64641081)
               

               
               1-459, gnl|Hg17|chr11 (64641273-64640806)
               

               
               1-459, gnl|loxAfr1|scaffold_6967 (39947-40403)
               

               
               1-459, gnl|mm7|chr19 (5957099-5956640)
               

               
               1-459, gnl|Mm7|chr19 (5956461-5956916)
               

               
               1-459, gnl|monDom2|scaffold_107 (3918753-3918282)
               

               
               1-459, gnl|panTro1|chr9 (65887761-65888217)
               

               
               1-459, gnl|rheMac2|chr14 (9322243-9321787)
               

               
               1-459, gnl|rn3|chr1 (208853688-208853229)
               

               
               1-459, gnl|xenTro1|scaffold_251 (1406539-1406994)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-459, gnl|bosTau2|chr29 (34240892-34240437)
               

               
               1-459, gnl|canFam2|chr18 (55104018-55103562)
               

               
               1-459, gnl|danRer3|chr10 (21869239-21869682)
               

               
               1-459, gnl|echTel1|scaffold_292923 (6279-5822)
               

               
               1-459, gnl|hg17|chr11 (64640625-64641081)
               

               
               1-459, gnl|Hg17|chr11 (64641273-64640806)
               

               
               1-459, gnl|loxAfr1|scaffold_6967 (39947-40403)
               

               
               1-459, gnl|mm7|chr19 (5957099-5956640)
               

               
               1-459, gnl|Mm7|chr19 (5956461-5956916)
               

               
               1-459, gnl|monDom2|scaffold_107 (3918753-3918282)
               

               
               1-459, gnl|panTro1|chr9 (65887761-65888217)
               

               
               1-459, gnl|rheMac2|chr14 (9322243-9321787)
               

               
               1-459, gnl|rn3|chr1 (208853688-208853229)
               

               
               1-459, gnl|xenTro1|scaffold_251 (1406539-1406994)

	1-459, gnl\|bosTau2\|chr29 (34240892-34240437)
	1-459, gnl\|canFam2\|chr18 (55104018-55103562)
	1-459, gnl\|danRer3\|chr10 (21869239-21869682)
	1-459, gnl\|echTel1\|scaffold_292923 (6279-5822)
	1-459, gnl\|hg17\|chr11 (64640625-64641081)
	1-459, gnl\|Hg17\|chr11 (64641273-64640806)
	1-459, gnl\|loxAfr1\|scaffold_6967 (39947-40403)
	1-459, gnl\|mm7\|chr19 (5957099-5956640)
	1-459, gnl\|Mm7\|chr19 (5956461-5956916)
	1-459, gnl\|monDom2\|scaffold_107 (3918753-3918282)
	1-459, gnl\|panTro1\|chr9 (65887761-65888217)
	1-459, gnl\|rheMac2\|chr14 (9322243-9321787)
	1-459, gnl\|rn3\|chr1 (208853688-208853229)
	1-459, gnl\|xenTro1\|scaffold_251 (1406539-1406994)