Non-Coding RNA Search

Ova2-C0003265_C09

Sequence:


               
               CAAAGTCCTAAAGGGGAAGAAGCTGAGCTTGCCGGCGTAACCCTGGCCTCACCAGCCTTC
TCCGAGGCAGGGCAGGAGGCAGAGAAGAGAAAGGCTGTGGAGACCAAGAGCCTTCCCATC
CAGAGTTGACTTTGTGAAGAGCTCACCTCTCCTGGCTCCCTGCCCCTCCAGCTGGGTTTT
GGGTCCATGGAAGACCCTTCTCCTGGGGAGCTCAGGACCTGAGCTGTTTGTAGCCTTTTG
CCTTTTAGAAAAGAAAAACAAAAAACAAATCTTTCCACTATTTAGTTTTTGATTCTGATA
ACTTTTTTCTCTTCTACCTGGCCCTGATTTTTTATAAACTGTGTTTTGAGTGTTCTCTGG
ACCAGGGCCGGTGGAGGTCTGTCCCCTTCTCCAAGGTCCCACCCCAGCCCCATGGTTGCC
AAACACTACGTCTGCCAATGTCTGCCTGCCCACCTTGGCTGTGACCACGATGTTCCCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAAGTCCTAAAGGGGAAGAAGCTGAGCTTGCCGGCGTAACCCTGGCCTCACCAGCCTTC
TCCGAGGCAGGGCAGGAGGCAGAGAAGAGAAAGGCTGTGGAGACCAAGAGCCTTCCCATC
CAGAGTTGACTTTGTGAAGAGCTCACCTCTCCTGGCTCCCTGCCCCTCCAGCTGGGTTTT
GGGTCCATGGAAGACCCTTCTCCTGGGGAGCTCAGGACCTGAGCTGTTTGTAGCCTTTTG
CCTTTTAGAAAAGAAAAACAAAAAACAAATCTTTCCACTATTTAGTTTTTGATTCTGATA
ACTTTTTTCTCTTCTACCTGGCCCTGATTTTTTATAAACTGTGTTTTGAGTGTTCTCTGG
ACCAGGGCCGGTGGAGGTCTGTCCCCTTCTCCAAGGTCCCACCCCAGCCCCATGGTTGCC
AAACACTACGTCTGCCAATGTCTGCCTGCCCACCTTGGCTGTGACCACGATGTTCCCTTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               116-228, - strand, RNAz p=0.985118
               

               
               269-382, + strand, RNAz p=0.689655

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-228, - strand, RNAz p=0.985118
               

               
               269-382, + strand, RNAz p=0.689655

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC018778, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC018778, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-387, gnl|bosTau2|chr18 (50415747-50416141)
               

               
               1-387, gnl|Hg17|chr19 (53578401-53578016)
               

               
               1-387, gnl|Mm7|chr7 (42059206-42059580)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-387, gnl|bosTau2|chr18 (50415747-50416141)
               

               
               1-387, gnl|Hg17|chr19 (53578401-53578016)
               

               
               1-387, gnl|Mm7|chr7 (42059206-42059580)

	116-228, - strand, RNAz p=0.985118
	269-382, + strand, RNAz p=0.689655

	1-387, gnl\|bosTau2\|chr18 (50415747-50416141)
	1-387, gnl\|Hg17\|chr19 (53578401-53578016)
	1-387, gnl\|Mm7\|chr7 (42059206-42059580)