Non-Coding RNA Search

Ova2-C0003265_G02

Sequence:


               
               CTGCCTTGAAAACTGAACGAAGCTAGCCTTCCTTTTTACACAGCCACAGTCCTCTGGTGG
AAATGTACAGCAGAGACTCTGGAGAGGCTAAGAGCATCTCTGTTCCCTTCCCCCAGACTT
TTCCTGTGAGAAGTCAATAATTAAGCAAATTGCTTAACACTTGGTTCCAGGTCCTGCATA
CCTGGAACTTAAAGGCATAGTAACCATTTTTCCATGCTGCAGGTTTCATTGTAGAGAGAG
AGGAACAAGGTGTCCTTACACTGACGCGAAGAACTGATCCATCCTAAAGCCTAGAGCCCC
ATGCCGCACCGGAGAGCAGGTGTCTACTGACCTGAGCTTTACAGAGTGAGAGCACATGGT
ATATGTCTTTCTTTCCTTTGGAAATTTGTGTATTATTCTTTCTGCCTGTCTACTTTTCTG
CAAAAATGAGATGTACAGATTCCTGTCCCCGCTGTGAAAGTAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCTTGAAAACTGAACGAAGCTAGCCTTCCTTTTTACACAGCCACAGTCCTCTGGTGG
AAATGTACAGCAGAGACTCTGGAGAGGCTAAGAGCATCTCTGTTCCCTTCCCCCAGACTT
TTCCTGTGAGAAGTCAATAATTAAGCAAATTGCTTAACACTTGGTTCCAGGTCCTGCATA
CCTGGAACTTAAAGGCATAGTAACCATTTTTCCATGCTGCAGGTTTCATTGTAGAGAGAG
AGGAACAAGGTGTCCTTACACTGACGCGAAGAACTGATCCATCCTAAAGCCTAGAGCCCC
ATGCCGCACCGGAGAGCAGGTGTCTACTGACCTGAGCTTTACAGAGTGAGAGCACATGGT
ATATGTCTTTCTTTCCTTTGGAAATTTGTGTATTATTCTTTCTGCCTGTCTACTTTTCTG
CAAAAATGAGATGTACAGATTCCTGTCCCCGCTGTGAAAGTAATGT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               38-225, - strand, RNAz p=0.997581
               

               
               275-366, - strand, RNAz p=0.996266

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               38-225, - strand, RNAz p=0.997581
               

               
               275-366, - strand, RNAz p=0.996266

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               38-223, EST226699 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone 
(gb|AI230004.1|), blast E-value=0, identity=100% 
               

               
               38-225, EST291617 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone 
(gb|AW141558.1|), blast E-value=0, identity=100% 
               

               
               38-225, UI-R-BS2-bec-c-06-0-UI.s1 UI-R-BS2 Rattus norvegicus cDNA clone 
(gb|BF397840.1|), blast E-value=0, identity=99.47% 
               

               
               38-225, NISC_ly11e11.y1 NCI_CGAP_Pr32 Rattus norvegicus cDNA clone 
(gb|CA340107.1|), blast E-value=0, identity=100% 
               

               
               38-225, UI-R-FJ0-cpu-j-11-0-UI.r1 UI-R-FJ0 Rattus norvegicus cDNA clone 
(gb|CA510683.1|), blast E-value=0, identity=100% 
               

               
               38-225, RVL18841 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV726501.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               38-223, EST226699 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone 
(gb|AI230004.1|), blast E-value=0, identity=100% 
               

               
               38-225, EST291617 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone 
(gb|AW141558.1|), blast E-value=0, identity=100% 
               

               
               38-225, UI-R-BS2-bec-c-06-0-UI.s1 UI-R-BS2 Rattus norvegicus cDNA clone 
(gb|BF397840.1|), blast E-value=0, identity=99.47% 
               

               
               38-225, NISC_ly11e11.y1 NCI_CGAP_Pr32 Rattus norvegicus cDNA clone 
(gb|CA340107.1|), blast E-value=0, identity=100% 
               

               
               38-225, UI-R-FJ0-cpu-j-11-0-UI.r1 UI-R-FJ0 Rattus norvegicus cDNA clone 
(gb|CA510683.1|), blast E-value=0, identity=100% 
               

               
               38-225, RVL18841 Wackym-Soares normalized rat vestibular cDNA library 
(gb|DV726501.1|), blast E-value=0, identity=100%

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-466, gnl|bosTau2|chrX (41533859-41533370)
               

               
               1-466, gnl|canFam2|chr3 (75496359-75495636)
               

               
               1-466, gnl|echTel1|scaffold_290921 (59324-60023)
               

               
               1-466, gnl|galGal2|chr4 (69614053-69613318)
               

               
               1-466, gnl|hg17|chr4 (39649011-39649707)
               

               
               1-466, gnl|Hg17|chr4 (39649549-39649061)
               

               
               1-466, gnl|loxAfr1|scaffold_11982 (98879-98165)
               

               
               1-466, gnl|mm7|chr5 (64964382-64965036)
               

               
               1-466, gnl|Mm7|chr5 (64964898-64964429)
               

               
               1-466, gnl|monDom2|scaffold_26 (4904372-4905062)
               

               
               1-466, gnl|oryCun1|scaffold_209202 (44300-44994)
               

               
               1-466, gnl|panTro1|chr3 (42346470-42347166)
               

               
               1-466, gnl|rheMac2|chr5 (34825244-34825945)
               

               
               1-466, gnl|rn3|chr14 (45342926-45342281)
               

               
               1-466, gnl|xenTro1|scaffold_84 (1928421-1927683)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-466, gnl|bosTau2|chrX (41533859-41533370)
               

               
               1-466, gnl|canFam2|chr3 (75496359-75495636)
               

               
               1-466, gnl|echTel1|scaffold_290921 (59324-60023)
               

               
               1-466, gnl|galGal2|chr4 (69614053-69613318)
               

               
               1-466, gnl|hg17|chr4 (39649011-39649707)
               

               
               1-466, gnl|Hg17|chr4 (39649549-39649061)
               

               
               1-466, gnl|loxAfr1|scaffold_11982 (98879-98165)
               

               
               1-466, gnl|mm7|chr5 (64964382-64965036)
               

               
               1-466, gnl|Mm7|chr5 (64964898-64964429)
               

               
               1-466, gnl|monDom2|scaffold_26 (4904372-4905062)
               

               
               1-466, gnl|oryCun1|scaffold_209202 (44300-44994)
               

               
               1-466, gnl|panTro1|chr3 (42346470-42347166)
               

               
               1-466, gnl|rheMac2|chr5 (34825244-34825945)
               

               
               1-466, gnl|rn3|chr14 (45342926-45342281)
               

               
               1-466, gnl|xenTro1|scaffold_84 (1928421-1927683)

	38-225, - strand, RNAz p=0.997581
	275-366, - strand, RNAz p=0.996266

	38-223, EST226699 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone (gb\|AI230004.1\|), blast E-value=0, identity=100%
	38-225, EST291617 Normalized rat embryo, Bento Soares Rattus sp. cDNA clone (gb\|AW141558.1\|), blast E-value=0, identity=100%
	38-225, UI-R-BS2-bec-c-06-0-UI.s1 UI-R-BS2 Rattus norvegicus cDNA clone (gb\|BF397840.1\|), blast E-value=0, identity=99.47%
	38-225, NISC_ly11e11.y1 NCI_CGAP_Pr32 Rattus norvegicus cDNA clone (gb\|CA340107.1\|), blast E-value=0, identity=100%
	38-225, UI-R-FJ0-cpu-j-11-0-UI.r1 UI-R-FJ0 Rattus norvegicus cDNA clone (gb\|CA510683.1\|), blast E-value=0, identity=100%
	38-225, RVL18841 Wackym-Soares normalized rat vestibular cDNA library (gb\|DV726501.1\|), blast E-value=0, identity=100%

	1-466, gnl\|bosTau2\|chrX (41533859-41533370)
	1-466, gnl\|canFam2\|chr3 (75496359-75495636)
	1-466, gnl\|echTel1\|scaffold_290921 (59324-60023)
	1-466, gnl\|galGal2\|chr4 (69614053-69613318)
	1-466, gnl\|hg17\|chr4 (39649011-39649707)
	1-466, gnl\|Hg17\|chr4 (39649549-39649061)
	1-466, gnl\|loxAfr1\|scaffold_11982 (98879-98165)
	1-466, gnl\|mm7\|chr5 (64964382-64965036)
	1-466, gnl\|Mm7\|chr5 (64964898-64964429)
	1-466, gnl\|monDom2\|scaffold_26 (4904372-4905062)
	1-466, gnl\|oryCun1\|scaffold_209202 (44300-44994)
	1-466, gnl\|panTro1\|chr3 (42346470-42347166)
	1-466, gnl\|rheMac2\|chr5 (34825244-34825945)
	1-466, gnl\|rn3\|chr14 (45342926-45342281)
	1-466, gnl\|xenTro1\|scaffold_84 (1928421-1927683)