Non-Coding RNA Search

Ova2-C0003265_I04

Sequence:


               
               CTTCGGAGCCACACAGGCTTCTGGCTGGATGTGTATGTAGCATGTATCTTATTAATTTTT
GTATTACTGACAAGTTACAACAGCAGTTGTGGGCCAGAGTCAGAAGGGCAGCTGGTCTGC
ACTGGCCTCTGCCCGGGCTGTGTGCTGGGGGGAGGCGGGGGGAGGTCTCCGACAGTTTGT
CGACAGATCTCATGGTCTGAAAGGACCGAGCTTGTTCGTCGTTTGGTTTGTATCTTGTTT
TGGGGGTGGGGTGGGGGGATCGGAGCTTCACTACTGACCTGTTCGAGGCAGCTATCTTAC
AGACTGCATGAATGTAAGAATAGGAAGGGGGTGGGTGTTAGGATCATTTGGGATCTTCAA
CACTTGAAACAAAATAACACCAGGGAGCTGCATCCCAGCCCATCCCGGTGCCGGTGTACT
GG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCGGAGCCACACAGGCTTCTGGCTGGATGTGTATGTAGCATGTATCTTATTAATTTTT
GTATTACTGACAAGTTACAACAGCAGTTGTGGGCCAGAGTCAGAAGGGCAGCTGGTCTGC
ACTGGCCTCTGCCCGGGCTGTGTGCTGGGGGGAGGCGGGGGGAGGTCTCCGACAGTTTGT
CGACAGATCTCATGGTCTGAAAGGACCGAGCTTGTTCGTCGTTTGGTTTGTATCTTGTTT
TGGGGGTGGGGTGGGGGGATCGGAGCTTCACTACTGACCTGTTCGAGGCAGCTATCTTAC
AGACTGCATGAATGTAAGAATAGGAAGGGGGTGGGTGTTAGGATCATTTGGGATCTTCAA
CACTTGAAACAAAATAACACCAGGGAGCTGCATCCCAGCCCATCCCGGTGCCGGTGTACT
GG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               40-140, + strand, RNAz p=0.662897
               

               
               282-405, - strand, RNAz p=0.759788

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-140, + strand, RNAz p=0.662897
               

               
               282-405, - strand, RNAz p=0.759788

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-405, gnl|bosTau2|chr28 (20778521-20778127)
               

               
               1-405, gnl|Hg17|chr10 (73705182-73705589)
               

               
               1-405, gnl|Mm7|chr10 (59468479-59468078)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-405, gnl|bosTau2|chr28 (20778521-20778127)
               

               
               1-405, gnl|Hg17|chr10 (73705182-73705589)
               

               
               1-405, gnl|Mm7|chr10 (59468479-59468078)

	40-140, + strand, RNAz p=0.662897
	282-405, - strand, RNAz p=0.759788

	1-405, gnl\|bosTau2\|chr28 (20778521-20778127)
	1-405, gnl\|Hg17\|chr10 (73705182-73705589)
	1-405, gnl\|Mm7\|chr10 (59468479-59468078)