Non-Coding RNA Search

Ova2-C0003271_G14

Sequence:


               
               GGAAAACCCGGGCAGAGACAATGGGGCCGATAGGCTGGATGAAGTGTCCTCTCGCTGGTA
CGAATAAAAGATTCCTTATTAACACAATTAAGAACACATTGCCCTCCCATAAAGAGCAAG
ACCACTAACAAAAAGAGGGCAGTAAGGAGCCTGGCTAAAGTCAAGACCAGAAGGAAACAA
GTGGGAAGAAACACAGAAGCCACTCCTACAAGCGCAGCCTTCACTCATCCCGGGGCTCAG
TGGGCTGCTCTCCTCCAAGGAAGCGGGCCTCCCGGGACAAGTGTGACCCAAGGCCCAGCC
GGCGATGAGATGGCTGCAAGGTCAGCCCAGCCCGTACTGCACCTGCCACTGGGCGCATCG
AGGCAAGGAGGCCGGGAGGTGGCGGGCTCTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAACCCGGGCAGAGACAATGGGGCCGATAGGCTGGATGAAGTGTCCTCTCGCTGGTA
CGAATAAAAGATTCCTTATTAACACAATTAAGAACACATTGCCCTCCCATAAAGAGCAAG
ACCACTAACAAAAAGAGGGCAGTAAGGAGCCTGGCTAAAGTCAAGACCAGAAGGAAACAA
GTGGGAAGAAACACAGAAGCCACTCCTACAAGCGCAGCCTTCACTCATCCCGGGGCTCAG
TGGGCTGCTCTCCTCCAAGGAAGCGGGCCTCCCGGGACAAGTGTGACCCAAGGCCCAGCC
GGCGATGAGATGGCTGCAAGGTCAGCCCAGCCCGTACTGCACCTGCCACTGGGCGCATCG
AGGCAAGGAGGCCGGGAGGTGGCGGGCTCTGA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|34870334|ref|XP_341033.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34870334|ref|XP_341033.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               239-331, - strand, RNAz p=0.97381

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               239-331, - strand, RNAz p=0.97381

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               37-331, gnl|bosTau2|chr12 (16980769-16981055)
               

               
               37-331, gnl|canFam2|chr25 (14942202-14941770)
               

               
               37-331, gnl|dasNov1|scaffold_75611 (4198-3801)
               

               
               37-331, gnl|echTel1|scaffold_250587 (8688-8244)
               

               
               37-331, gnl|galGal2|chr1 (168163243-168162813)
               

               
               37-331, gnl|hg17|chr13 (27137656-27138093)
               

               
               37-331, gnl|Hg17|chr13 (27137822-27138109)
               

               
               37-331, gnl|mm7|chr5 (146004904-146005334)
               

               
               37-331, gnl|Mm7|chr5 (146005051-146005353)
               

               
               37-331, gnl|monDom2|scaffold_15 (36815232-36815659)
               

               
               37-331, gnl|oryCun1|scaffold_167744 (8124-8539)
               

               
               37-331, gnl|panTro1|chr14 (26322979-26323415)
               

               
               37-331, gnl|rheMac2|chr17 (7368635-7369072)
               

               
               37-331, gnl|rn3|chr12 (8483953-8484362)
               

               
               37-331, gnl|xenTro1|scaffold_449 (506929-507319)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-331, gnl|bosTau2|chr12 (16980769-16981055)
               

               
               37-331, gnl|canFam2|chr25 (14942202-14941770)
               

               
               37-331, gnl|dasNov1|scaffold_75611 (4198-3801)
               

               
               37-331, gnl|echTel1|scaffold_250587 (8688-8244)
               

               
               37-331, gnl|galGal2|chr1 (168163243-168162813)
               

               
               37-331, gnl|hg17|chr13 (27137656-27138093)
               

               
               37-331, gnl|Hg17|chr13 (27137822-27138109)
               

               
               37-331, gnl|mm7|chr5 (146004904-146005334)
               

               
               37-331, gnl|Mm7|chr5 (146005051-146005353)
               

               
               37-331, gnl|monDom2|scaffold_15 (36815232-36815659)
               

               
               37-331, gnl|oryCun1|scaffold_167744 (8124-8539)
               

               
               37-331, gnl|panTro1|chr14 (26322979-26323415)
               

               
               37-331, gnl|rheMac2|chr17 (7368635-7369072)
               

               
               37-331, gnl|rn3|chr12 (8483953-8484362)
               

               
               37-331, gnl|xenTro1|scaffold_449 (506929-507319)

	37-331, gnl\|bosTau2\|chr12 (16980769-16981055)
	37-331, gnl\|canFam2\|chr25 (14942202-14941770)
	37-331, gnl\|dasNov1\|scaffold_75611 (4198-3801)
	37-331, gnl\|echTel1\|scaffold_250587 (8688-8244)
	37-331, gnl\|galGal2\|chr1 (168163243-168162813)
	37-331, gnl\|hg17\|chr13 (27137656-27138093)
	37-331, gnl\|Hg17\|chr13 (27137822-27138109)
	37-331, gnl\|mm7\|chr5 (146004904-146005334)
	37-331, gnl\|Mm7\|chr5 (146005051-146005353)
	37-331, gnl\|monDom2\|scaffold_15 (36815232-36815659)
	37-331, gnl\|oryCun1\|scaffold_167744 (8124-8539)
	37-331, gnl\|panTro1\|chr14 (26322979-26323415)
	37-331, gnl\|rheMac2\|chr17 (7368635-7369072)
	37-331, gnl\|rn3\|chr12 (8483953-8484362)
	37-331, gnl\|xenTro1\|scaffold_449 (506929-507319)