Non-Coding RNA Search

Ova2-C0003272_A16

Sequence:


               
               GCCGCGTGGAGAGGCAGGACCTGTGGGGGCTATCGGGCCTGCGGGGGAGTGCTCGGTGCC
CCCACGATCAGCCTTCAGTGCCAAGCGATCAGAGAGCCGGGTACCTCCGCCAGCCGACAC
ACCCCTACCCTTCGACCGTGTGCTGCTCAATGAGCAGGGACATTACGATGCCACTACCGG
CAAGTTCACCTGCCAAGTGCCTGGTGTCTACTACTTTGCTGTCCATGCCACTGTCTACCG
GGCCAGCCTACAGTTTGATCTTGTCAAAAATGGCCAATCCATAGCTTCTTTCTTCCAGTT
TTTTGGGGGGTGGCCAAAGCCAGCCTCGCTCTCAGGGGGTGCGATGGTGAGGCTAGAACC
TGAGGACCAGGTATGGGTTCAGGTGGGTGTGGGTGATTACATTGGCATCTATGCCAGCAT
CAAAACAGACAGTACCTTCTCTGGATTTCTCGTCTATTCTGACTGGCACAGCTCCACAGT
CTTCGCTTAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCGTGGAGAGGCAGGACCTGTGGGGGCTATCGGGCCTGCGGGGGAGTGCTCGGTGCC
CCCACGATCAGCCTTCAGTGCCAAGCGATCAGAGAGCCGGGTACCTCCGCCAGCCGACAC
ACCCCTACCCTTCGACCGTGTGCTGCTCAATGAGCAGGGACATTACGATGCCACTACCGG
CAAGTTCACCTGCCAAGTGCCTGGTGTCTACTACTTTGCTGTCCATGCCACTGTCTACCG
GGCCAGCCTACAGTTTGATCTTGTCAAAAATGGCCAATCCATAGCTTCTTTCTTCCAGTT
TTTTGGGGGGTGGCCAAAGCCAGCCTCGCTCTCAGGGGGTGCGATGGTGAGGCTAGAACC
TGAGGACCAGGTATGGGTTCAGGTGGGTGTGGGTGATTACATTGGCATCTATGCCAGCAT
CAAAACAGACAGTACCTTCTCTGGATTTCTCGTCTATTCTGACTGGCACAGCTCCACAGT
CTTCGCTTAAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5817223|emb|CAB53702.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5817223|emb|CAB53702.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-95, + strand, RNAz p=0.879575
               

               
               240-359, + strand, RNAz p=0.864352

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-95, + strand, RNAz p=0.879575
               

               
               240-359, + strand, RNAz p=0.864352

Aligned organism(s): 19 entry(ies)

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Aligned organism(s): 19 entry(ies)

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               1-488, gnl|bosTau2|chr15 (14425734-14425247)
               

               
               1-488, gnl|canFam2|chr5 (17569382-17568913)
               

               
               1-488, gnl|danRer3|chr16 (16272901-16272433)
               

               
               1-488, gnl|dasNov1|scaffold_98752 (1161-692)
               

               
               1-488, gnl|echTel1|scaffold_280617 (41570-42036)
               

               
               1-488, gnl|fr1|chrUn (124442347-124441870)
               

               
               1-488, gnl|galGal2|chr24 (4084566-4084098)
               

               
               1-488, gnl|hg17|chr11 (118715229-118715698)
               

               
               1-488, gnl|Hg17|chr11 (118715740-118715253)
               

               
               1-488, gnl|loxAfr1|scaffold_34557 (6101-5636)
               

               
               1-488, gnl|mm7|chr9 (44043181-44042712)
               

               
               1-488, gnl|Mm7|chr9 (44042668-44043155)
               

               
               1-488, gnl|monDom2|scaffold_2 (119172512-119172040)
               

               
               1-488, gnl|oryCun1|scaffold_197393 (57763-57295)
               

               
               1-488, gnl|panTro1|chr9 (120737332-120737801)
               

               
               1-488, gnl|rheMac2|chr14 (117752786-117753254)
               

               
               1-488, gnl|rn3|chr8 (47099852-47099383)
               

               
               1-488, gnl|tetNig1|chr16 (511577-511134)
               

               
               1-488, gnl|xenTro1|scaffold_75 (768361-768817)

Aligned organism(s): 19 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-488, gnl|bosTau2|chr15 (14425734-14425247)
               

               
               1-488, gnl|canFam2|chr5 (17569382-17568913)
               

               
               1-488, gnl|danRer3|chr16 (16272901-16272433)
               

               
               1-488, gnl|dasNov1|scaffold_98752 (1161-692)
               

               
               1-488, gnl|echTel1|scaffold_280617 (41570-42036)
               

               
               1-488, gnl|fr1|chrUn (124442347-124441870)
               

               
               1-488, gnl|galGal2|chr24 (4084566-4084098)
               

               
               1-488, gnl|hg17|chr11 (118715229-118715698)
               

               
               1-488, gnl|Hg17|chr11 (118715740-118715253)
               

               
               1-488, gnl|loxAfr1|scaffold_34557 (6101-5636)
               

               
               1-488, gnl|mm7|chr9 (44043181-44042712)
               

               
               1-488, gnl|Mm7|chr9 (44042668-44043155)
               

               
               1-488, gnl|monDom2|scaffold_2 (119172512-119172040)
               

               
               1-488, gnl|oryCun1|scaffold_197393 (57763-57295)
               

               
               1-488, gnl|panTro1|chr9 (120737332-120737801)
               

               
               1-488, gnl|rheMac2|chr14 (117752786-117753254)
               

               
               1-488, gnl|rn3|chr8 (47099852-47099383)
               

               
               1-488, gnl|tetNig1|chr16 (511577-511134)
               

               
               1-488, gnl|xenTro1|scaffold_75 (768361-768817)

	1-95, + strand, RNAz p=0.879575
	240-359, + strand, RNAz p=0.864352

	1-488, gnl\|bosTau2\|chr15 (14425734-14425247)
	1-488, gnl\|canFam2\|chr5 (17569382-17568913)
	1-488, gnl\|danRer3\|chr16 (16272901-16272433)
	1-488, gnl\|dasNov1\|scaffold_98752 (1161-692)
	1-488, gnl\|echTel1\|scaffold_280617 (41570-42036)
	1-488, gnl\|fr1\|chrUn (124442347-124441870)
	1-488, gnl\|galGal2\|chr24 (4084566-4084098)
	1-488, gnl\|hg17\|chr11 (118715229-118715698)
	1-488, gnl\|Hg17\|chr11 (118715740-118715253)
	1-488, gnl\|loxAfr1\|scaffold_34557 (6101-5636)
	1-488, gnl\|mm7\|chr9 (44043181-44042712)
	1-488, gnl\|Mm7\|chr9 (44042668-44043155)
	1-488, gnl\|monDom2\|scaffold_2 (119172512-119172040)
	1-488, gnl\|oryCun1\|scaffold_197393 (57763-57295)
	1-488, gnl\|panTro1\|chr9 (120737332-120737801)
	1-488, gnl\|rheMac2\|chr14 (117752786-117753254)
	1-488, gnl\|rn3\|chr8 (47099852-47099383)
	1-488, gnl\|tetNig1\|chr16 (511577-511134)
	1-488, gnl\|xenTro1\|scaffold_75 (768361-768817)