Non-Coding RNA Search

Ova2-C0003272_C09

Sequence:


               
               CTTCTGCGAGCCACACTGAGAGCCTGGAGTCGCTCCTGTCCAAGAGCCAGGAGTACGAGC
AACGCCTGGCCATGCTGCAGGAGCACGTAGAAAGCCTGGGGCCTATCTCTGACCTGGCCA
GCACGGTGAGGAGCCTGGAGGAGACCCAGCTGGCGCTCTCCAGCGACTTGAAGGGGCTGA
AGCAAGGCTTGGGTGAGCTGCCAGGGACTGTGGAGTCGCTGCAGGAGCAAGTGCATTTGC
TGCTCAGCCAGGACCCAGCCCAGGCCGCGGGCTTGCCTCCTCAGGACTTCCTGGATAGAC
TCTCCTCTCTAGACAACCTGAAATCCTCAGTAAGCCAAGTGGAATCAGACTTGAAAATGC
TCAGGACGGCTGTGGACAGTTTGGTTGCCTACTCTGTTAAAATCGAAACGAACGAGAATA
GCTTAGAGTCCGCCAAGGGCCTGCTGGACGACCTTCGGAATGATCTGGATAGGTTGTTCG
TGAAAGTCGAGAAGATCCATGAAAAGATCTGAACGAACCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTGCGAGCCACACTGAGAGCCTGGAGTCGCTCCTGTCCAAGAGCCAGGAGTACGAGC
AACGCCTGGCCATGCTGCAGGAGCACGTAGAAAGCCTGGGGCCTATCTCTGACCTGGCCA
GCACGGTGAGGAGCCTGGAGGAGACCCAGCTGGCGCTCTCCAGCGACTTGAAGGGGCTGA
AGCAAGGCTTGGGTGAGCTGCCAGGGACTGTGGAGTCGCTGCAGGAGCAAGTGCATTTGC
TGCTCAGCCAGGACCCAGCCCAGGCCGCGGGCTTGCCTCCTCAGGACTTCCTGGATAGAC
TCTCCTCTCTAGACAACCTGAAATCCTCAGTAAGCCAAGTGGAATCAGACTTGAAAATGC
TCAGGACGGCTGTGGACAGTTTGGTTGCCTACTCTGTTAAAATCGAAACGAACGAGAATA
GCTTAGAGTCCGCCAAGGGCCTGCTGGACGACCTTCGGAATGATCTGGATAGGTTGTTCG
TGAAAGTCGAGAAGATCCATGAAAAGATCTGAACGAACCGG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q8BTK8_MOUSE

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q8BTK8_MOUSE

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               151-261, + strand, RNAz p=0.707201
               

               
               159-259, - strand, RNAz p=0.666836

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-261, + strand, RNAz p=0.707201
               

               
               159-259, - strand, RNAz p=0.666836

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               3-513, gnl|bosTau2|chr5 (42106974-42106452)
               

               
               3-513, gnl|canFam2|chr10 (35521695-35522272)
               

               
               3-513, gnl|dasNov1|scaffold_268 (137578-136995)
               

               
               3-513, gnl|echTel1|scaffold_156670 (4827-4289)
               

               
               3-513, gnl|galGal2|chr1 (50620745-50621337)
               

               
               3-513, gnl|Hg17|chr12 (105135799-105135268)
               

               
               3-513, gnl|hg17|chr7 (144404591-144405131)
               

               
               3-513, gnl|loxAfr1|scaffold_28380 (12853-13436)
               

               
               3-513, gnl|mm7|chr10 (84069396-84068837)
               

               
               3-513, gnl|Mm7|chr10 (84069343-84068833)
               

               
               3-513, gnl|monDom2|scaffold_34 (7140320-7140906)
               

               
               3-513, gnl|oryCun1|scaffold_212716 (46375-45792)
               

               
               3-513, gnl|panTro1|chr6 (147070784-147071324)
               

               
               3-513, gnl|rheMac2|chr11 (107332592-107332012)
               

               
               3-513, gnl|rn3|chr7 (21387096-21387655)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-513, gnl|bosTau2|chr5 (42106974-42106452)
               

               
               3-513, gnl|canFam2|chr10 (35521695-35522272)
               

               
               3-513, gnl|dasNov1|scaffold_268 (137578-136995)
               

               
               3-513, gnl|echTel1|scaffold_156670 (4827-4289)
               

               
               3-513, gnl|galGal2|chr1 (50620745-50621337)
               

               
               3-513, gnl|Hg17|chr12 (105135799-105135268)
               

               
               3-513, gnl|hg17|chr7 (144404591-144405131)
               

               
               3-513, gnl|loxAfr1|scaffold_28380 (12853-13436)
               

               
               3-513, gnl|mm7|chr10 (84069396-84068837)
               

               
               3-513, gnl|Mm7|chr10 (84069343-84068833)
               

               
               3-513, gnl|monDom2|scaffold_34 (7140320-7140906)
               

               
               3-513, gnl|oryCun1|scaffold_212716 (46375-45792)
               

               
               3-513, gnl|panTro1|chr6 (147070784-147071324)
               

               
               3-513, gnl|rheMac2|chr11 (107332592-107332012)
               

               
               3-513, gnl|rn3|chr7 (21387096-21387655)

	151-261, + strand, RNAz p=0.707201
	159-259, - strand, RNAz p=0.666836

	3-513, gnl\|bosTau2\|chr5 (42106974-42106452)
	3-513, gnl\|canFam2\|chr10 (35521695-35522272)
	3-513, gnl\|dasNov1\|scaffold_268 (137578-136995)
	3-513, gnl\|echTel1\|scaffold_156670 (4827-4289)
	3-513, gnl\|galGal2\|chr1 (50620745-50621337)
	3-513, gnl\|Hg17\|chr12 (105135799-105135268)
	3-513, gnl\|hg17\|chr7 (144404591-144405131)
	3-513, gnl\|loxAfr1\|scaffold_28380 (12853-13436)
	3-513, gnl\|mm7\|chr10 (84069396-84068837)
	3-513, gnl\|Mm7\|chr10 (84069343-84068833)
	3-513, gnl\|monDom2\|scaffold_34 (7140320-7140906)
	3-513, gnl\|oryCun1\|scaffold_212716 (46375-45792)
	3-513, gnl\|panTro1\|chr6 (147070784-147071324)
	3-513, gnl\|rheMac2\|chr11 (107332592-107332012)
	3-513, gnl\|rn3\|chr7 (21387096-21387655)