Non-Coding RNA Search

Ova2-C0003272_F01

Sequence:


               
               CTCTGGTACGTCCAAACGAAGAAGAGTGGCCGATGACCACGAGCTGCGCATTCCTCTGGA
CTACGGCTGGCAGAGAGAGACCAGGGTGAGGAACTTCGGTGGGCGCCTTCCAGGAGAAGT
CACGTATTATGCCCCGTGTGGAAAGAAGCTCAGGCAGTACCCTGACATGATAAAGGGAAT
GCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCG
AAGAGGAAGACCACCCAATCCAGATAGACCAAGAGCAAGAGAGGAATCCAGGATGAAACG
CCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCCGAATTCCTAGATAACACAGATGCAAA
ACTACTAAGGAAACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTGGTACGTCCAAACGAAGAAGAGTGGCCGATGACCACGAGCTGCGCATTCCTCTGGA
CTACGGCTGGCAGAGAGAGACCAGGGTGAGGAACTTCGGTGGGCGCCTTCCAGGAGAAGT
CACGTATTATGCCCCGTGTGGAAAGAAGCTCAGGCAGTACCCTGACATGATAAAGGGAAT
GCAGTGGTGTCTTTTGAAAGAAGAGGATGTCATTCCTCGTATCAGGGCAATGGACGGCCG
AAGAGGAAGACCACCCAATCCAGATAGACCAAGAGCAAGAGAGGAATCCAGGATGAAACG
CCGGAAGGGTCGCCCTCCCAATGTTGGCAGTGCCGAATTCCTAGATAACACAGATGCAAA
ACTACTAAGGAAACT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               172-290, + strand, RNAz p=0.799302

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-290, + strand, RNAz p=0.799302

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX641037, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX641037, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               172-375, gnl|bosTau2|chr23 (15121829-15122032)
               

               
               172-375, gnl|canFam2|chr36 (8165475-8165694)
               

               
               172-375, gnl|dasNov1|scaffold_55095 (8999-9217)
               

               
               172-375, gnl|echTel1|scaffold_314166 (43519-43301)
               

               
               172-375, gnl|fr1|chrUn (268895568-268895804)
               

               
               172-375, gnl|galGal2|chr7 (37201624-37201843)
               

               
               172-375, gnl|hg17|chr2 (160094347-160094566)
               

               
               172-375, gnl|Hg17|chr2 (160094567-160094364)
               

               
               172-375, gnl|loxAfr1|scaffold_4354 (52861-52642)
               

               
               172-375, gnl|mm7|chr2 (59878630-59878849)
               

               
               172-375, gnl|Mm7|chr2 (59878850-59878647)
               

               
               172-375, gnl|monDom2|scaffold_2 (53233119-53233338)
               

               
               172-375, gnl|oryCun1|scaffold_184391 (6545-6764)
               

               
               172-375, gnl|panTro1|chr13 (49462957-49463176)
               

               
               172-375, gnl|rheMac2|chr12 (22958873-22959092)
               

               
               172-375, gnl|rn3|chr3 (41560639-41560858)
               

               
               172-375, gnl|tetNig1|chr5 (9281952-9282178)
               

               
               172-375, gnl|xenTro1|scaffold_311 (1133163-1132949)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-375, gnl|bosTau2|chr23 (15121829-15122032)
               

               
               172-375, gnl|canFam2|chr36 (8165475-8165694)
               

               
               172-375, gnl|dasNov1|scaffold_55095 (8999-9217)
               

               
               172-375, gnl|echTel1|scaffold_314166 (43519-43301)
               

               
               172-375, gnl|fr1|chrUn (268895568-268895804)
               

               
               172-375, gnl|galGal2|chr7 (37201624-37201843)
               

               
               172-375, gnl|hg17|chr2 (160094347-160094566)
               

               
               172-375, gnl|Hg17|chr2 (160094567-160094364)
               

               
               172-375, gnl|loxAfr1|scaffold_4354 (52861-52642)
               

               
               172-375, gnl|mm7|chr2 (59878630-59878849)
               

               
               172-375, gnl|Mm7|chr2 (59878850-59878647)
               

               
               172-375, gnl|monDom2|scaffold_2 (53233119-53233338)
               

               
               172-375, gnl|oryCun1|scaffold_184391 (6545-6764)
               

               
               172-375, gnl|panTro1|chr13 (49462957-49463176)
               

               
               172-375, gnl|rheMac2|chr12 (22958873-22959092)
               

               
               172-375, gnl|rn3|chr3 (41560639-41560858)
               

               
               172-375, gnl|tetNig1|chr5 (9281952-9282178)
               

               
               172-375, gnl|xenTro1|scaffold_311 (1133163-1132949)

	172-375, gnl\|bosTau2\|chr23 (15121829-15122032)
	172-375, gnl\|canFam2\|chr36 (8165475-8165694)
	172-375, gnl\|dasNov1\|scaffold_55095 (8999-9217)
	172-375, gnl\|echTel1\|scaffold_314166 (43519-43301)
	172-375, gnl\|fr1\|chrUn (268895568-268895804)
	172-375, gnl\|galGal2\|chr7 (37201624-37201843)
	172-375, gnl\|hg17\|chr2 (160094347-160094566)
	172-375, gnl\|Hg17\|chr2 (160094567-160094364)
	172-375, gnl\|loxAfr1\|scaffold_4354 (52861-52642)
	172-375, gnl\|mm7\|chr2 (59878630-59878849)
	172-375, gnl\|Mm7\|chr2 (59878850-59878647)
	172-375, gnl\|monDom2\|scaffold_2 (53233119-53233338)
	172-375, gnl\|oryCun1\|scaffold_184391 (6545-6764)
	172-375, gnl\|panTro1\|chr13 (49462957-49463176)
	172-375, gnl\|rheMac2\|chr12 (22958873-22959092)
	172-375, gnl\|rn3\|chr3 (41560639-41560858)
	172-375, gnl\|tetNig1\|chr5 (9281952-9282178)
	172-375, gnl\|xenTro1\|scaffold_311 (1133163-1132949)