Non-Coding RNA Search

Ova2-C0003272_I06

Sequence:


               
               TGGTAACCCTTTGGCAGGAGTCAGGGAACAGGCCGGCTTGGGAGGAAAGAAGCATCACTC
CTCTCTTCTTTCCTCTGTAACCCTTGTGAGTCAGCCTCCCTCCTCCTCTCATTCACATGC
AAGGGTGCCAGAGCTCCAGGCATGTCCTTTTCTTGTGCATATGTGGCAACACATCCACGT
CATGTGCTGACATTTCCACCCACATGTACATTCTGAACCTCCCCTTGCTGCCTCAGTCAG
ACCTCTGTCTACTGGGCTTGGTCCATGGATATTTCAAAGGGAGATTTCCCTTCCCATTTA
GCTGTCCTCACTGAACTAGGACAAGTGGCCAACACTGCACTCAATGAGCCAGCCTCCCTC
TTAGGGACCAAGCAATTGCTTCTCCTAGACCAGAGCAGGAGGAAGTGATCTGTTATCTCA
CCTGGCACATGAAGCCCATTCCTGGAACTATGCAAAGGGCAGAGGCTGGGAGTTTGGATG
CTTGGCTCCCATTCCTGTCCTACCCTCACAGGGCACTTTCAAGGTCAGGGCCTCAGATGT
CTCCAGCCCATATGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTAACCCTTTGGCAGGAGTCAGGGAACAGGCCGGCTTGGGAGGAAAGAAGCATCACTC
CTCTCTTCTTTCCTCTGTAACCCTTGTGAGTCAGCCTCCCTCCTCCTCTCATTCACATGC
AAGGGTGCCAGAGCTCCAGGCATGTCCTTTTCTTGTGCATATGTGGCAACACATCCACGT
CATGTGCTGACATTTCCACCCACATGTACATTCTGAACCTCCCCTTGCTGCCTCAGTCAG
ACCTCTGTCTACTGGGCTTGGTCCATGGATATTTCAAAGGGAGATTTCCCTTCCCATTTA
GCTGTCCTCACTGAACTAGGACAAGTGGCCAACACTGCACTCAATGAGCCAGCCTCCCTC
TTAGGGACCAAGCAATTGCTTCTCCTAGACCAGAGCAGGAGGAAGTGATCTGTTATCTCA
CCTGGCACATGAAGCCCATTCCTGGAACTATGCAAAGGGCAGAGGCTGGGAGTTTGGATG
CTTGGCTCCCATTCCTGTCCTACCCTCACAGGGCACTTTCAAGGTCAGGGCCTCAGATGT
CTCCAGCCCATATGG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               207-315, - strand, RNAz p=0.871214
               

               
               416-555, - strand, RNAz p=0.961199
               

               
               418-555, + strand, RNAz p=0.863126

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               207-315, - strand, RNAz p=0.871214
               

               
               416-555, - strand, RNAz p=0.961199
               

               
               418-555, + strand, RNAz p=0.863126

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_017893, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017893, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               181-555, gnl|bosTau2|chr26 (13390119-13390498)
               

               
               181-555, gnl|canFam2|chr28 (16669326-16669714)
               

               
               181-555, gnl|dasNov1|scaffold_11344 (12940-12521)
               

               
               181-555, gnl|echTel1|scaffold_277702 (6778-7199)
               

               
               181-555, gnl|hg17|chr10 (102734594-102735031)
               

               
               181-555, gnl|Hg17|chr10 (102734676-102735085)
               

               
               181-555, gnl|mm7|chr19 (44896544-44896940)
               

               
               181-555, gnl|Mm7|chr19 (44896616-44896994)
               

               
               181-555, gnl|monDom2|scaffold_14 (62703667-62703232)
               

               
               181-555, gnl|oryCun1|scaffold_211698 (159700-160091)
               

               
               181-555, gnl|panTro1|chr8_random (3374854-3375292)
               

               
               181-555, gnl|rheMac2|chr9 (100595791-100596231)
               

               
               181-555, gnl|rn3|chr1 (250328810-250329230)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-555, gnl|bosTau2|chr26 (13390119-13390498)
               

               
               181-555, gnl|canFam2|chr28 (16669326-16669714)
               

               
               181-555, gnl|dasNov1|scaffold_11344 (12940-12521)
               

               
               181-555, gnl|echTel1|scaffold_277702 (6778-7199)
               

               
               181-555, gnl|hg17|chr10 (102734594-102735031)
               

               
               181-555, gnl|Hg17|chr10 (102734676-102735085)
               

               
               181-555, gnl|mm7|chr19 (44896544-44896940)
               

               
               181-555, gnl|Mm7|chr19 (44896616-44896994)
               

               
               181-555, gnl|monDom2|scaffold_14 (62703667-62703232)
               

               
               181-555, gnl|oryCun1|scaffold_211698 (159700-160091)
               

               
               181-555, gnl|panTro1|chr8_random (3374854-3375292)
               

               
               181-555, gnl|rheMac2|chr9 (100595791-100596231)
               

               
               181-555, gnl|rn3|chr1 (250328810-250329230)

	207-315, - strand, RNAz p=0.871214
	416-555, - strand, RNAz p=0.961199
	418-555, + strand, RNAz p=0.863126

	181-555, gnl\|bosTau2\|chr26 (13390119-13390498)
	181-555, gnl\|canFam2\|chr28 (16669326-16669714)
	181-555, gnl\|dasNov1\|scaffold_11344 (12940-12521)
	181-555, gnl\|echTel1\|scaffold_277702 (6778-7199)
	181-555, gnl\|hg17\|chr10 (102734594-102735031)
	181-555, gnl\|Hg17\|chr10 (102734676-102735085)
	181-555, gnl\|mm7\|chr19 (44896544-44896940)
	181-555, gnl\|Mm7\|chr19 (44896616-44896994)
	181-555, gnl\|monDom2\|scaffold_14 (62703667-62703232)
	181-555, gnl\|oryCun1\|scaffold_211698 (159700-160091)
	181-555, gnl\|panTro1\|chr8_random (3374854-3375292)
	181-555, gnl\|rheMac2\|chr9 (100595791-100596231)
	181-555, gnl\|rn3\|chr1 (250328810-250329230)