Non-Coding RNA Search

Ova2-C0003273_C05

Sequence:


               
               CCCGCGGTGGCGGCCGCGGCTCGAGGGCTATTATGCCGTACTGCTTGCACTTGATGCTGG
CCTGCTTTAAGCTGAGAGCTTTTACAGACAACAGAGACGACATGGCACTGGGCCATGTGA
TTGTCCTGCTCCAACAGGAGTGGCCACGGGGAGAGAACCTTTTCCTGAAAGCCATCAGTA
AGATTTGCCAGCAAGGAAATTTCCAGTATGAGAACTTCTTCAGCTATGTTACAAACATTG
ATATGCTGGAGGAATTTGCTTATTTAAGAACCCAGGAAGGAGGGAAGATTCATCTGGAAT
TACTCCCAAATCAAGGAATGCTGATCAAGCACCACACAGTCACTCGAGGCATCACCAAAG
GTGTGAAGGAGGACTTCCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGTGAGAACC
TGATGGTGGTCCTGCATCGCTTCTGCATTAATGAGAAGATCCTGCTCCTGCAGACTCTGA
CCCTGATCGACCTCCTCCTGGGCACCAGCAGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCGCGGTGGCGGCCGCGGCTCGAGGGCTATTATGCCGTACTGCTTGCACTTGATGCTGG
CCTGCTTTAAGCTGAGAGCTTTTACAGACAACAGAGACGACATGGCACTGGGCCATGTGA
TTGTCCTGCTCCAACAGGAGTGGCCACGGGGAGAGAACCTTTTCCTGAAAGCCATCAGTA
AGATTTGCCAGCAAGGAAATTTCCAGTATGAGAACTTCTTCAGCTATGTTACAAACATTG
ATATGCTGGAGGAATTTGCTTATTTAAGAACCCAGGAAGGAGGGAAGATTCATCTGGAAT
TACTCCCAAATCAAGGAATGCTGATCAAGCACCACACAGTCACTCGAGGCATCACCAAAG
GTGTGAAGGAGGACTTCCGCCTGGCCATGGAGCGCCAGGTCTCCCGCTGTGGTGAGAACC
TGATGGTGGTCCTGCATCGCTTCTGCATTAATGAGAAGATCCTGCTCCTGCAGACTCTGA
CCCTGATCGACCTCCTCCTGGGCACCAGCAGCTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q502S7_BRARE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q502S7_BRARE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-484, + strand, RNAz p=0.516361

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-484, + strand, RNAz p=0.516361

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               70-234, gnl|bosTau2|chr27 (24269694-24269530)
               

               
               70-234, gnl|Hg17|chr8 (19745865-19746029)
               

               
               70-234, gnl|Mm7|chr8 (67275411-67275575)
               


               
               326-495, gnl|bosTau2|chr27 (24263914-24263746)
               

               
               326-495, gnl|Hg17|chr8 (19753437-19753609)
               

               
               326-495, gnl|Mm7|chr8 (67282032-67282200)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               70-234, gnl|bosTau2|chr27 (24269694-24269530)
               

               
               70-234, gnl|Hg17|chr8 (19745865-19746029)
               

               
               70-234, gnl|Mm7|chr8 (67275411-67275575)
               


               
               326-495, gnl|bosTau2|chr27 (24263914-24263746)
               

               
               326-495, gnl|Hg17|chr8 (19753437-19753609)
               

               
               326-495, gnl|Mm7|chr8 (67282032-67282200)

	70-234, gnl\|bosTau2\|chr27 (24269694-24269530)
	70-234, gnl\|Hg17\|chr8 (19745865-19746029)
	70-234, gnl\|Mm7\|chr8 (67275411-67275575)

	326-495, gnl\|bosTau2\|chr27 (24263914-24263746)
	326-495, gnl\|Hg17\|chr8 (19753437-19753609)
	326-495, gnl\|Mm7\|chr8 (67282032-67282200)