Non-Coding RNA Search

Ova2-C0003273_G09

Sequence:


               
               GGCAAGGAGAGGATGGCCACCTCGGGCGTGGAGAAGAGTAGCAAGAAGAAAACCGAGAAG
AAACTTGCGGCTCGCGAAGAAGCCAAGCTGCTGGCGGGGTTCATGGGCGTCATGAACAAC
ATGAGGAAGCAGGTGCGGGCGGTGAAGGGCGGTGCGGAGGGCAGGGGCACGGCGGAGGCT
GGTGGCGGGGCCGGGCGCCTTGGCTGCCAGCCTGCTCCGCCACGGGGCTTCCGAGGCCCG
CTCGGCGGGGACTCCTGAGGCGGGCGGGGGGCCTCCGGGGCGGTTGTGTAACCAGTCTCC
TCCAGTCTCCGTGAGGCCTGGAGCCTTCCGTTGCCGTGCGGTGTCATCTGGAGCTCTCGG
AGGGAGGCTTCCCACCCCGCCGCCCTGTCACCCATGTAGCATTAGTTAACAATCATCCCA
TACCTGCTCATTTAGGGCGACACCAGTCACCAGTAAATAACCATTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAAGGAGAGGATGGCCACCTCGGGCGTGGAGAAGAGTAGCAAGAAGAAAACCGAGAAG
AAACTTGCGGCTCGCGAAGAAGCCAAGCTGCTGGCGGGGTTCATGGGCGTCATGAACAAC
ATGAGGAAGCAGGTGCGGGCGGTGAAGGGCGGTGCGGAGGGCAGGGGCACGGCGGAGGCT
GGTGGCGGGGCCGGGCGCCTTGGCTGCCAGCCTGCTCCGCCACGGGGCTTCCGAGGCCCG
CTCGGCGGGGACTCCTGAGGCGGGCGGGGGGCCTCCGGGGCGGTTGTGTAACCAGTCTCC
TCCAGTCTCCGTGAGGCCTGGAGCCTTCCGTTGCCGTGCGGTGTCATCTGGAGCTCTCGG
AGGGAGGCTTCCCACCCCGCCGCCCTGTCACCCATGTAGCATTAGTTAACAATCATCCCA
TACCTGCTCATTTAGGGCGACACCAGTCACCAGTAAATAACCATTTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               9-134, - strand, RNAz p=0.96715
               

               
               33-127, - strand, RNAz p=0.703591

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               9-134, - strand, RNAz p=0.96715
               

               
               33-127, - strand, RNAz p=0.703591

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

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               9-134, gnl|bosTau2|chr4 (11741189-11741314)
               

               
               9-134, gnl|canFam2|chr14 (39751848-39752011)
               

               
               9-134, gnl|dasNov1|scaffold_119834 (1352-1495)
               

               
               9-134, gnl|echTel1|scaffold_205017 (6527-6397)
               

               
               9-134, gnl|galGal2|chr2 (30248219-30248358)
               

               
               9-134, gnl|hg17|chr7 (22918876-22919020)
               

               
               9-134, gnl|Hg17|chr7 (22918882-22919007)
               

               
               9-134, gnl|loxAfr1|scaffold_5303 (91641-91785)
               

               
               9-134, gnl|mm7|chr5 (23141241-23141395)
               

               
               9-134, gnl|Mm7|chr5 (23141244-23141369)
               

               
               9-134, gnl|monDom2|scaffold_57 (4135129-4134989)
               

               
               9-134, gnl|oryCun1|scaffold_194221 (345-489)
               

               
               9-134, gnl|panTro1|chr6 (23988399-23988543)
               

               
               9-134, gnl|rheMac2|chr3 (103148190-103148046)
               

               
               9-134, gnl|rn3|chr4 (6422355-6422222)
               

               
               9-134, gnl|xenTro1|scaffold_29 (33973-33829)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-134, gnl|bosTau2|chr4 (11741189-11741314)
               

               
               9-134, gnl|canFam2|chr14 (39751848-39752011)
               

               
               9-134, gnl|dasNov1|scaffold_119834 (1352-1495)
               

               
               9-134, gnl|echTel1|scaffold_205017 (6527-6397)
               

               
               9-134, gnl|galGal2|chr2 (30248219-30248358)
               

               
               9-134, gnl|hg17|chr7 (22918876-22919020)
               

               
               9-134, gnl|Hg17|chr7 (22918882-22919007)
               

               
               9-134, gnl|loxAfr1|scaffold_5303 (91641-91785)
               

               
               9-134, gnl|mm7|chr5 (23141241-23141395)
               

               
               9-134, gnl|Mm7|chr5 (23141244-23141369)
               

               
               9-134, gnl|monDom2|scaffold_57 (4135129-4134989)
               

               
               9-134, gnl|oryCun1|scaffold_194221 (345-489)
               

               
               9-134, gnl|panTro1|chr6 (23988399-23988543)
               

               
               9-134, gnl|rheMac2|chr3 (103148190-103148046)
               

               
               9-134, gnl|rn3|chr4 (6422355-6422222)
               

               
               9-134, gnl|xenTro1|scaffold_29 (33973-33829)

	9-134, - strand, RNAz p=0.96715
	33-127, - strand, RNAz p=0.703591

	9-134, gnl\|bosTau2\|chr4 (11741189-11741314)
	9-134, gnl\|canFam2\|chr14 (39751848-39752011)
	9-134, gnl\|dasNov1\|scaffold_119834 (1352-1495)
	9-134, gnl\|echTel1\|scaffold_205017 (6527-6397)
	9-134, gnl\|galGal2\|chr2 (30248219-30248358)
	9-134, gnl\|hg17\|chr7 (22918876-22919020)
	9-134, gnl\|Hg17\|chr7 (22918882-22919007)
	9-134, gnl\|loxAfr1\|scaffold_5303 (91641-91785)
	9-134, gnl\|mm7\|chr5 (23141241-23141395)
	9-134, gnl\|Mm7\|chr5 (23141244-23141369)
	9-134, gnl\|monDom2\|scaffold_57 (4135129-4134989)
	9-134, gnl\|oryCun1\|scaffold_194221 (345-489)
	9-134, gnl\|panTro1\|chr6 (23988399-23988543)
	9-134, gnl\|rheMac2\|chr3 (103148190-103148046)
	9-134, gnl\|rn3\|chr4 (6422355-6422222)
	9-134, gnl\|xenTro1\|scaffold_29 (33973-33829)