Non-Coding RNA Search

Ova2-C0003273_M19

Sequence:


               
               GAAGATTGTAGCTTCAGGCCCAACATCACTTCCCACAGACAGACCGGCTCCCAGGCCCCC
AGTGCCCCACAGGCAGCCCATTGTGCACTTCAGCGACGTGAGCAGCGATGATGATGAGGA
CAGACTTGTCATAGCAACCTAGTGGTTTGTTTTTTATTGATTTTTTTAATAGCAGGTTTT
TTTGAAAAACCCTCCTTTCCTTAAAGCACATTTTTTCTGACGTAAACTCATGACTAATCT
TTGTGCAATCATGAACTTTTGACCAATAATTGTTTTTTTGTGTTAGCTCCAGCCATTTTT
GTACATGTTGTATAGACAATTGTGCCTTTTAGGAGTTTTATGTTTAGAATCTGTACAGAT
GGTTGAATATCTATATACATACAATATGTTATATATGTATATGAAAACCAGGTAGTTGTG
TTTAGTAGAAACTTGTCAAATAATCAGAATGATTAATGATATGTTGCACTGTTTAATATA
AATTTTATGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGATTGTAGCTTCAGGCCCAACATCACTTCCCACAGACAGACCGGCTCCCAGGCCCCC
AGTGCCCCACAGGCAGCCCATTGTGCACTTCAGCGACGTGAGCAGCGATGATGATGAGGA
CAGACTTGTCATAGCAACCTAGTGGTTTGTTTTTTATTGATTTTTTTAATAGCAGGTTTT
TTTGAAAAACCCTCCTTTCCTTAAAGCACATTTTTTCTGACGTAAACTCATGACTAATCT
TTGTGCAATCATGAACTTTTGACCAATAATTGTTTTTTTGTGTTAGCTCCAGCCATTTTT
GTACATGTTGTATAGACAATTGTGCCTTTTAGGAGTTTTATGTTTAGAATCTGTACAGAT
GGTTGAATATCTATATACATACAATATGTTATATATGTATATGAAAACCAGGTAGTTGTG
TTTAGTAGAAACTTGTCAAATAATCAGAATGATTAATGATATGTTGCACTGTTTAATATA
AATTTTATGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               305-419, + strand, RNAz p=0.776965
               

               
               318-428, - strand, RNAz p=0.924066

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               305-419, + strand, RNAz p=0.776965
               

               
               318-428, - strand, RNAz p=0.924066

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_002114, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002114, +

Aligned organism(s): 19 entry(ies)

More info

Aligned organism(s): 19 entry(ies)

Help | Less info


               
               146-490, gnl|bosTau2|chr23 (33765096-33764749)
               

               
               146-490, gnl|canFam2|chr35 (14708707-14709733)
               

               
               146-490, gnl|danRer3|chr19 (409889-408888)
               

               
               146-490, gnl|dasNov1|scaffold_2113 (32184-31255)
               

               
               146-490, gnl|echTel1|scaffold_262172 (5503-4597)
               

               
               146-490, gnl|fr1|chrUn (86176511-86177417)
               

               
               146-490, gnl|galGal2|chr2 (62457779-62456840)
               

               
               146-490, gnl|hg17|chr6 (12271975-12272914)
               

               
               146-490, gnl|Hg17|chr6 (12272701-12273047)
               

               
               146-490, gnl|loxAfr1|scaffold_8090 (70266-71185)
               

               
               146-490, gnl|mm7|chr13 (41624628-41625504)
               

               
               146-490, gnl|Mm7|chr13 (41625299-41625628)
               

               
               146-490, gnl|monDom2|scaffold_3 (99530710-99531567)
               

               
               146-490, gnl|oryCun1|scaffold_136527 (5216-5992)
               

               
               146-490, gnl|panTro1|chr5 (12552162-12553103)
               

               
               146-490, gnl|rheMac2|chr4 (12132822-12133763)
               

               
               146-490, gnl|rn3|chr17 (28452260-28451388)
               

               
               146-490, gnl|tetNig1|chrUn_random (105177302-105178146)
               

               
               146-490, gnl|xenTro1|scaffold_278 (302753-301814)

Aligned organism(s): 19 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               146-490, gnl|bosTau2|chr23 (33765096-33764749)
               

               
               146-490, gnl|canFam2|chr35 (14708707-14709733)
               

               
               146-490, gnl|danRer3|chr19 (409889-408888)
               

               
               146-490, gnl|dasNov1|scaffold_2113 (32184-31255)
               

               
               146-490, gnl|echTel1|scaffold_262172 (5503-4597)
               

               
               146-490, gnl|fr1|chrUn (86176511-86177417)
               

               
               146-490, gnl|galGal2|chr2 (62457779-62456840)
               

               
               146-490, gnl|hg17|chr6 (12271975-12272914)
               

               
               146-490, gnl|Hg17|chr6 (12272701-12273047)
               

               
               146-490, gnl|loxAfr1|scaffold_8090 (70266-71185)
               

               
               146-490, gnl|mm7|chr13 (41624628-41625504)
               

               
               146-490, gnl|Mm7|chr13 (41625299-41625628)
               

               
               146-490, gnl|monDom2|scaffold_3 (99530710-99531567)
               

               
               146-490, gnl|oryCun1|scaffold_136527 (5216-5992)
               

               
               146-490, gnl|panTro1|chr5 (12552162-12553103)
               

               
               146-490, gnl|rheMac2|chr4 (12132822-12133763)
               

               
               146-490, gnl|rn3|chr17 (28452260-28451388)
               

               
               146-490, gnl|tetNig1|chrUn_random (105177302-105178146)
               

               
               146-490, gnl|xenTro1|scaffold_278 (302753-301814)

	305-419, + strand, RNAz p=0.776965
	318-428, - strand, RNAz p=0.924066

	146-490, gnl\|bosTau2\|chr23 (33765096-33764749)
	146-490, gnl\|canFam2\|chr35 (14708707-14709733)
	146-490, gnl\|danRer3\|chr19 (409889-408888)
	146-490, gnl\|dasNov1\|scaffold_2113 (32184-31255)
	146-490, gnl\|echTel1\|scaffold_262172 (5503-4597)
	146-490, gnl\|fr1\|chrUn (86176511-86177417)
	146-490, gnl\|galGal2\|chr2 (62457779-62456840)
	146-490, gnl\|hg17\|chr6 (12271975-12272914)
	146-490, gnl\|Hg17\|chr6 (12272701-12273047)
	146-490, gnl\|loxAfr1\|scaffold_8090 (70266-71185)
	146-490, gnl\|mm7\|chr13 (41624628-41625504)
	146-490, gnl\|Mm7\|chr13 (41625299-41625628)
	146-490, gnl\|monDom2\|scaffold_3 (99530710-99531567)
	146-490, gnl\|oryCun1\|scaffold_136527 (5216-5992)
	146-490, gnl\|panTro1\|chr5 (12552162-12553103)
	146-490, gnl\|rheMac2\|chr4 (12132822-12133763)
	146-490, gnl\|rn3\|chr17 (28452260-28451388)
	146-490, gnl\|tetNig1\|chrUn_random (105177302-105178146)
	146-490, gnl\|xenTro1\|scaffold_278 (302753-301814)