Ova2-C0003273_P22
|
CGCAGACACACAGAATAAGGTGCACCAGCTCTATGAGACCATCCAGCGCTGGAGCCCTGT
GGCCTCCACTCTCCCTGAGCTGGTACAGAGACTTGTCACCATCAAGCAGCTTCATGAGCA
AGCTATGCAGTTTGGTCAGCTCCTGACACACTTGGATACCACCCAGCAGATGATGGCGAG
TTCTCTTAAGGACAATACTGCCCTCCTGACCCAGGTTCAGACAACGATGCGTGAAAACTT
GGCCACAGTTGAGGGGAATTTTGCCAGCATTGATGCTCGTATGAAGAAGCTGGGAAAGTG
AGCGCCACTGGGAGTTGGGGAGCTGGGGTAACCCTTGCCCCTGAGCTTTGTCAGACACTT
CCACAGAGCTTCCCCTTGACCATACTCATAGTCACATCCCACCTGACAAGGGCAAGGGTT
CTTCTTGCATGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CGCAGACACACAGAATAAGGTGCACCAGCTCTATGAGACCATCCAGCGCTGGAGCCCTGT
GGCCTCCACTCTCCCTGAGCTGGTACAGAGACTTGTCACCATCAAGCAGCTTCATGAGCA
AGCTATGCAGTTTGGTCAGCTCCTGACACACTTGGATACCACCCAGCAGATGATGGCGAG
TTCTCTTAAGGACAATACTGCCCTCCTGACCCAGGTTCAGACAACGATGCGTGAAAACTT
GGCCACAGTTGAGGGGAATTTTGCCAGCATTGATGCTCGTATGAAGAAGCTGGGAAAGTG
AGCGCCACTGGGAGTTGGGGAGCTGGGGTAACCCTTGCCCCTGAGCTTTGTCAGACACTT
CCACAGAGCTTCCCCTTGACCATACTCATAGTCACATCCCACCTGACAAGGGCAAGGGTT
CTTCTTGCATGT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
292-432, BP468848 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA
(dbj|BP468848.1|), blast E-value=0, identity=99.29% |
|
292-432, BP482134 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA
(dbj|BP482134.1|), blast E-value=0, identity=99.29% |
|
292-432, UI-R-DZ0-crn-k-22-0-UI.s1 NCI_CGAP_DZ0 Rattus norvegicus cDNA clone
(gb|CB325604.1|), blast E-value=0, identity=99.29% |
|
292-432, AMGNNUC (gb|CB781995.1|), blast E-value=0, identity=99.29% |
|
292-432, UI-R-BJ0p-afd-d-06-0-UI.s10 UI-R-BJ0p Rattus norvegicus cDNA clone
(gb|CK841235.1|), blast E-value=0, identity=99.29% |
|
292-432, UI-R-DR1-clr-a-24-0-UI.s1 UI-R-DR1 Rattus norvegicus cDNA clone
(gb|CN541738.1|), blast E-value=0, identity=99.29% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
292-432, BP468848 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA
(dbj|BP468848.1|), blast E-value=0, identity=99.29% |
|
292-432, BP482134 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA
(dbj|BP482134.1|), blast E-value=0, identity=99.29% |
|
292-432, UI-R-DZ0-crn-k-22-0-UI.s1 NCI_CGAP_DZ0 Rattus norvegicus cDNA clone
(gb|CB325604.1|), blast E-value=0, identity=99.29% |
|
292-432, AMGNNUC (gb|CB781995.1|), blast E-value=0, identity=99.29% |
|
292-432, UI-R-BJ0p-afd-d-06-0-UI.s10 UI-R-BJ0p Rattus norvegicus cDNA clone
(gb|CK841235.1|), blast E-value=0, identity=99.29% |
|
292-432, UI-R-DR1-clr-a-24-0-UI.s1 UI-R-DR1 Rattus norvegicus cDNA clone
(gb|CN541738.1|), blast E-value=0, identity=99.29% |
Human gene identifier and UTR site,
human gene reading direction
|
18-122, gnl|bosTau2|chr5 (34762557-34762661) |
|
18-122, gnl|canFam2|chr10 (4605177-4605306) |
|
18-122, gnl|danRer3|chrUn (40202251-40202359) |
|
18-122, gnl|echTel1|scaffold_315420 (48734-48608) |
|
18-122, gnl|hg17|chr12 (56212262-56212391) |
|
18-122, gnl|Hg17|chr12 (56212367-56212263) |
|
18-122, gnl|loxAfr1|scaffold_6997 (35186-35057) |
|
18-122, gnl|mm7|chr10 (126779621-126779495) |
|
18-122, gnl|Mm7|chr10 (126779514-126779618) |
|
18-122, gnl|panTro1|chr10 (57451457-57451586) |
|
18-122, gnl|rheMac2|chr11 (54609692-54609821) |
|
18-122, gnl|rn3|chr7 (67256756-67256629) |
|
18-122, gnl|tetNig1|chr11 (2648408-2648289) |
|
18-122, gnl|xenTro1|scaffold_34 (3232096-3231980) |
| |
|
213-432, gnl|bosTau2|chr5 (34763881-34764100) |
|
213-432, gnl|Hg17|chr12 (56210827-56210600) |
|
213-432, gnl|Mm7|chr10 (126782795-126782998) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
18-122, gnl|bosTau2|chr5 (34762557-34762661) |
|
18-122, gnl|canFam2|chr10 (4605177-4605306) |
|
18-122, gnl|danRer3|chrUn (40202251-40202359) |
|
18-122, gnl|echTel1|scaffold_315420 (48734-48608) |
|
18-122, gnl|hg17|chr12 (56212262-56212391) |
|
18-122, gnl|Hg17|chr12 (56212367-56212263) |
|
18-122, gnl|loxAfr1|scaffold_6997 (35186-35057) |
|
18-122, gnl|mm7|chr10 (126779621-126779495) |
|
18-122, gnl|Mm7|chr10 (126779514-126779618) |
|
18-122, gnl|panTro1|chr10 (57451457-57451586) |
|
18-122, gnl|rheMac2|chr11 (54609692-54609821) |
|
18-122, gnl|rn3|chr7 (67256756-67256629) |
|
18-122, gnl|tetNig1|chr11 (2648408-2648289) |
|
18-122, gnl|xenTro1|scaffold_34 (3232096-3231980) |
| |
|
213-432, gnl|bosTau2|chr5 (34763881-34764100) |
|
213-432, gnl|Hg17|chr12 (56210827-56210600) |
|
213-432, gnl|Mm7|chr10 (126782795-126782998) |
