Non-Coding RNA Search

Ova2-C0003274_H09

Sequence:


               
               GCGGCTCGAGACAGAGACCAGTGAAGCCACTGAGATCATTGAGGGCACGCAGACAGAGGT
GGATAGTCACATCATGAAGGTGGTCCAGCAGATCGTGCACCAGGCTGGCGCTGGGCACCA
GATCATTGTGCAGAATGTGACCATGGACCAGGAGGCAGCACTGGGCTCATAGGCAGCTGC
CGCGGACACGATCACCATTGCCACTCCTGAGAGTCTTACTGAGCAGGTGGCCATGACGCT
GGCTTCAGCCATCAGTGAGGGCACTGTGCTCACAGCCCGGGCAGGGCCGAACAGTACTGA
ACAGGCCACTGTGACAATGGTGTCATCAGAGGACATCGAGATCCTTGAGCACGGAGGGGA
GCTGGTCATTGCTTCACCAGAGGGCCAGCTTGAGGTGCAGACAGTCATTGTATAGTTTGA
GGGATTCTGCTGAGGAAGAGTGAGAACCCCGAGTGTCTGCCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGACAGAGACCAGTGAAGCCACTGAGATCATTGAGGGCACGCAGACAGAGGT
GGATAGTCACATCATGAAGGTGGTCCAGCAGATCGTGCACCAGGCTGGCGCTGGGCACCA
GATCATTGTGCAGAATGTGACCATGGACCAGGAGGCAGCACTGGGCTCATAGGCAGCTGC
CGCGGACACGATCACCATTGCCACTCCTGAGAGTCTTACTGAGCAGGTGGCCATGACGCT
GGCTTCAGCCATCAGTGAGGGCACTGTGCTCACAGCCCGGGCAGGGCCGAACAGTACTGA
ACAGGCCACTGTGACAATGGTGTCATCAGAGGACATCGAGATCCTTGAGCACGGAGGGGA
GCTGGTCATTGCTTCACCAGAGGGCCAGCTTGAGGTGCAGACAGTCATTGTATAGTTTGA
GGGATTCTGCTGAGGAAGAGTGAGAACCCCGAGTGTCTGCCCAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               263-366, + strand, RNAz p=0.530995

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               263-366, + strand, RNAz p=0.530995

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               54-414, gnl|bosTau2|chr25 (5033993-5033633)
               

               
               54-414, gnl|canFam2|chr6 (41785239-41784979)
               

               
               54-414, gnl|danRer3|chr3 (9415984-9415739)
               

               
               54-414, gnl|fr1|chrUn (144229496-144229759)
               

               
               54-414, gnl|galGal2|chr14 (8543780-8544023)
               

               
               54-414, gnl|hg17|chr16 (2225210-2225467)
               

               
               54-414, gnl|Hg17|chr16 (2225213-2225572)
               

               
               54-414, gnl|loxAfr1|scaffold_19629 (7709-7971)
               

               
               54-414, gnl|mm7|chr17 (22625172-22624915)
               

               
               54-414, gnl|Mm7|chr17 (22625167-22624807)
               

               
               54-414, gnl|monDom2|scaffold_5 (120745490-120745233)
               

               
               54-414, gnl|oryCun1|scaffold_147401 (597-340)
               

               
               54-414, gnl|panTro1|chr18 (2036074-2036331)
               

               
               54-414, gnl|rheMac2|chr20 (2231706-2231963)
               

               
               54-414, gnl|rn3|chr10 (13702102-13701845)
               

               
               54-414, gnl|tetNig1|chr3 (9088268-9088531)
               

               
               54-414, gnl|xenTro1|scaffold_12 (1489274-1489022)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               54-414, gnl|bosTau2|chr25 (5033993-5033633)
               

               
               54-414, gnl|canFam2|chr6 (41785239-41784979)
               

               
               54-414, gnl|danRer3|chr3 (9415984-9415739)
               

               
               54-414, gnl|fr1|chrUn (144229496-144229759)
               

               
               54-414, gnl|galGal2|chr14 (8543780-8544023)
               

               
               54-414, gnl|hg17|chr16 (2225210-2225467)
               

               
               54-414, gnl|Hg17|chr16 (2225213-2225572)
               

               
               54-414, gnl|loxAfr1|scaffold_19629 (7709-7971)
               

               
               54-414, gnl|mm7|chr17 (22625172-22624915)
               

               
               54-414, gnl|Mm7|chr17 (22625167-22624807)
               

               
               54-414, gnl|monDom2|scaffold_5 (120745490-120745233)
               

               
               54-414, gnl|oryCun1|scaffold_147401 (597-340)
               

               
               54-414, gnl|panTro1|chr18 (2036074-2036331)
               

               
               54-414, gnl|rheMac2|chr20 (2231706-2231963)
               

               
               54-414, gnl|rn3|chr10 (13702102-13701845)
               

               
               54-414, gnl|tetNig1|chr3 (9088268-9088531)
               

               
               54-414, gnl|xenTro1|scaffold_12 (1489274-1489022)

	54-414, gnl\|bosTau2\|chr25 (5033993-5033633)
	54-414, gnl\|canFam2\|chr6 (41785239-41784979)
	54-414, gnl\|danRer3\|chr3 (9415984-9415739)
	54-414, gnl\|fr1\|chrUn (144229496-144229759)
	54-414, gnl\|galGal2\|chr14 (8543780-8544023)
	54-414, gnl\|hg17\|chr16 (2225210-2225467)
	54-414, gnl\|Hg17\|chr16 (2225213-2225572)
	54-414, gnl\|loxAfr1\|scaffold_19629 (7709-7971)
	54-414, gnl\|mm7\|chr17 (22625172-22624915)
	54-414, gnl\|Mm7\|chr17 (22625167-22624807)
	54-414, gnl\|monDom2\|scaffold_5 (120745490-120745233)
	54-414, gnl\|oryCun1\|scaffold_147401 (597-340)
	54-414, gnl\|panTro1\|chr18 (2036074-2036331)
	54-414, gnl\|rheMac2\|chr20 (2231706-2231963)
	54-414, gnl\|rn3\|chr10 (13702102-13701845)
	54-414, gnl\|tetNig1\|chr3 (9088268-9088531)
	54-414, gnl\|xenTro1\|scaffold_12 (1489274-1489022)