Non-Coding RNA Search

Ova2-C0003274_K17

Sequence:


               
               CGAGCTGCTCGAAGGCCCAACTTACCCCTGAAGGTGAAGACAGCGCTGATGACAGTGCGG
CCCCCAGTTCCTCTGCCGGCATCTTCACATCCTGCTAGCACCAATGAGCCCATTGTCCTG
GAGGATTGAGCATCTTAGGGGAAGGGAGGTGGGATGAGAGGTAAAGGGTTGGTTGCCCAG
GGCATACAAATCTTCATTCCTTTTGGTATCAAAGGGAGTAAGGAGTGAGGGAGGGTTGGA
GTTGGTGTGCGTGTGTGTCCTTGCAGGGGTTGAACACCCTCTGGTGTTACTGCCAGTATC
TCCCCTTTTTGGGCTTCTCCATGCCTGTGATGGAAAACAGCCTATAGGAACTTACTTGTG
TGTACCTACCCTATTTGGGGCCTGGGACCCACAGTGGGTTTGGACAGTTGGGGGGAGGGT
TTTTTAATTTTCTTAAAATTTACCTTCCTTTGTAAAAGGATGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGCTGCTCGAAGGCCCAACTTACCCCTGAAGGTGAAGACAGCGCTGATGACAGTGCGG
CCCCCAGTTCCTCTGCCGGCATCTTCACATCCTGCTAGCACCAATGAGCCCATTGTCCTG
GAGGATTGAGCATCTTAGGGGAAGGGAGGTGGGATGAGAGGTAAAGGGTTGGTTGCCCAG
GGCATACAAATCTTCATTCCTTTTGGTATCAAAGGGAGTAAGGAGTGAGGGAGGGTTGGA
GTTGGTGTGCGTGTGTGTCCTTGCAGGGGTTGAACACCCTCTGGTGTTACTGCCAGTATC
TCCCCTTTTTGGGCTTCTCCATGCCTGTGATGGAAAACAGCCTATAGGAACTTACTTGTG
TGTACCTACCCTATTTGGGGCCTGGGACCCACAGTGGGTTTGGACAGTTGGGGGGAGGGT
TTTTTAATTTTCTTAAAATTTACCTTCCTTTGTAAAAGGATGGAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               161-279, - strand, RNAz p=0.999904
               

               
               349-459, + strand, RNAz p=0.94344

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               161-279, - strand, RNAz p=0.999904
               

               
               349-459, + strand, RNAz p=0.94344

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               161-279, BP479618 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP479618.1|), blast E-value=0, identity=98.32% 
               

               
               161-279, UI-R-CN1-cjh-n-06-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone 
(gb|BM386922.1|), blast E-value=0, identity=99.16% 
               

               
               161-279, UI-R-CN1-cmd-f-20-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone 
(gb|BQ195173.1|), blast E-value=0, identity=98.32% 
               

               
               161-279, UI-R-EB1-clg-a-17-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone 
(gb|BQ202275.1|), blast E-value=0, identity=100% 
               

               
               161-279, UI-R-FS0-cqr-f-16-0-UI.s1 NCI_CGAP_FS0 Rattus norvegicus cDNA clone 
(gb|CA510342.1|), blast E-value=0, identity=98.32% 
               

               
               161-279, AMGNNUC (gb|CB796214.1|), blast E-value=0, identity=98.32%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               161-279, BP479618 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA 
(dbj|BP479618.1|), blast E-value=0, identity=98.32% 
               

               
               161-279, UI-R-CN1-cjh-n-06-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone 
(gb|BM386922.1|), blast E-value=0, identity=99.16% 
               

               
               161-279, UI-R-CN1-cmd-f-20-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone 
(gb|BQ195173.1|), blast E-value=0, identity=98.32% 
               

               
               161-279, UI-R-EB1-clg-a-17-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone 
(gb|BQ202275.1|), blast E-value=0, identity=100% 
               

               
               161-279, UI-R-FS0-cqr-f-16-0-UI.s1 NCI_CGAP_FS0 Rattus norvegicus cDNA clone 
(gb|CA510342.1|), blast E-value=0, identity=98.32% 
               

               
               161-279, AMGNNUC (gb|CB796214.1|), blast E-value=0, identity=98.32%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               2-459, gnl|bosTau2|chr29 (32044620-32044156)
               

               
               2-459, gnl|Hg17|chr11 (62118050-62117591)
               

               
               2-459, gnl|Mm7|chr19 (8631690-8632143)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-459, gnl|bosTau2|chr29 (32044620-32044156)
               

               
               2-459, gnl|Hg17|chr11 (62118050-62117591)
               

               
               2-459, gnl|Mm7|chr19 (8631690-8632143)

	161-279, - strand, RNAz p=0.999904
	349-459, + strand, RNAz p=0.94344

	161-279, BP479618 Rattus norvegicus pancreatic islet Rattus norvegicus cDNA (dbj\|BP479618.1\|), blast E-value=0, identity=98.32%
	161-279, UI-R-CN1-cjh-n-06-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone (gb\|BM386922.1\|), blast E-value=0, identity=99.16%
	161-279, UI-R-CN1-cmd-f-20-0-UI.s1 UI-R-CN1 Rattus norvegicus cDNA clone (gb\|BQ195173.1\|), blast E-value=0, identity=98.32%
	161-279, UI-R-EB1-clg-a-17-0-UI.s1 UI-R-EB1 Rattus norvegicus cDNA clone (gb\|BQ202275.1\|), blast E-value=0, identity=100%
	161-279, UI-R-FS0-cqr-f-16-0-UI.s1 NCI_CGAP_FS0 Rattus norvegicus cDNA clone (gb\|CA510342.1\|), blast E-value=0, identity=98.32%
	161-279, AMGNNUC (gb\|CB796214.1\|), blast E-value=0, identity=98.32%

	2-459, gnl\|bosTau2\|chr29 (32044620-32044156)
	2-459, gnl\|Hg17\|chr11 (62118050-62117591)
	2-459, gnl\|Mm7\|chr19 (8631690-8632143)