Non-Coding RNA Search

Ova2-C0003274_K24

Sequence:


               
               GTTCTCCAGGAAGAACAAGTCGCTGCGATACTGAGGCTTGTTCATGTGCCAATAAATGTT
GTCAGACCAGCCCATGTGAAAGGAAGAGGAGGTCATATGGCTCACATAATACTAAGGAAG
ATATGGAGCCGGACTGGCTAACTTGGCCTGCTGGTACGCTGCACTGTACTGAATGTGTTG
TTTGCCTTGAGAATTTTGAGAATGGATGTTTGCTGATGGGGTTGCCTTGTGGTCATGTGT
TTCACCAGAATTGCATTGTTATGTGGTTGGCTGGGGGCCGACACTGTTGCCCTGTTTGCC
GTTGGCCTTCATATAAGAAAAAGCAGCCATATGCACAGCAACAGCCGTTGTCAAATGATG
CTCCATCTTGACCATGTGCAGTTGTCCAATAAGCTTTGAGTATCTTACAGCTTGCCTTTT
TTATGTTAGTCACAATGTTTTTGTGGTTTGAAGTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCTCCAGGAAGAACAAGTCGCTGCGATACTGAGGCTTGTTCATGTGCCAATAAATGTT
GTCAGACCAGCCCATGTGAAAGGAAGAGGAGGTCATATGGCTCACATAATACTAAGGAAG
ATATGGAGCCGGACTGGCTAACTTGGCCTGCTGGTACGCTGCACTGTACTGAATGTGTTG
TTTGCCTTGAGAATTTTGAGAATGGATGTTTGCTGATGGGGTTGCCTTGTGGTCATGTGT
TTCACCAGAATTGCATTGTTATGTGGTTGGCTGGGGGCCGACACTGTTGCCCTGTTTGCC
GTTGGCCTTCATATAAGAAAAAGCAGCCATATGCACAGCAACAGCCGTTGTCAAATGATG
CTCCATCTTGACCATGTGCAGTTGTCCAATAAGCTTTGAGTATCTTACAGCTTGCCTTTT
TTATGTTAGTCACAATGTTTTTGTGGTTTGAAGTTT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               240-359, + strand, RNAz p=0.732898

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               240-359, + strand, RNAz p=0.732898

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-456, gnl|bosTau2|chr11 (35297662-35297204)
               

               
               1-456, gnl|canFam2|chr17 (41631271-41630056)
               

               
               1-456, gnl|danRer3|chr14 (14162514-14161417)
               

               
               1-456, gnl|dasNov1|scaffold_8680 (60443-59231)
               

               
               1-456, gnl|echTel1|scaffold_283080 (42416-43635)
               

               
               1-456, gnl|galGal2|chr4 (85706015-85707236)
               

               
               1-456, gnl|hg17|chr2 (86742417-86743636)
               

               
               1-456, gnl|Hg17|chr2 (86742994-86742536)
               

               
               1-456, gnl|loxAfr1|scaffold_212117 (1212-4)
               

               
               1-456, gnl|mm7|chr6 (71528578-71527365)
               

               
               1-456, gnl|Mm7|chr6 (71528002-71528457)
               

               
               1-456, gnl|monDom2|scaffold_63 (864046-865235)
               

               
               1-456, gnl|oryCun1|scaffold_211666 (49610-48398)
               

               
               1-456, gnl|panTro1|chr12 (89625418-89626640)
               

               
               1-456, gnl|rheMac2|chr13 (87229138-87230356)
               

               
               1-456, gnl|rn3|chr4 (105022404-105021196)
               

               
               1-456, gnl|xenTro1|scaffold_149 (682244-683425)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-456, gnl|bosTau2|chr11 (35297662-35297204)
               

               
               1-456, gnl|canFam2|chr17 (41631271-41630056)
               

               
               1-456, gnl|danRer3|chr14 (14162514-14161417)
               

               
               1-456, gnl|dasNov1|scaffold_8680 (60443-59231)
               

               
               1-456, gnl|echTel1|scaffold_283080 (42416-43635)
               

               
               1-456, gnl|galGal2|chr4 (85706015-85707236)
               

               
               1-456, gnl|hg17|chr2 (86742417-86743636)
               

               
               1-456, gnl|Hg17|chr2 (86742994-86742536)
               

               
               1-456, gnl|loxAfr1|scaffold_212117 (1212-4)
               

               
               1-456, gnl|mm7|chr6 (71528578-71527365)
               

               
               1-456, gnl|Mm7|chr6 (71528002-71528457)
               

               
               1-456, gnl|monDom2|scaffold_63 (864046-865235)
               

               
               1-456, gnl|oryCun1|scaffold_211666 (49610-48398)
               

               
               1-456, gnl|panTro1|chr12 (89625418-89626640)
               

               
               1-456, gnl|rheMac2|chr13 (87229138-87230356)
               

               
               1-456, gnl|rn3|chr4 (105022404-105021196)
               

               
               1-456, gnl|xenTro1|scaffold_149 (682244-683425)

	1-456, gnl\|bosTau2\|chr11 (35297662-35297204)
	1-456, gnl\|canFam2\|chr17 (41631271-41630056)
	1-456, gnl\|danRer3\|chr14 (14162514-14161417)
	1-456, gnl\|dasNov1\|scaffold_8680 (60443-59231)
	1-456, gnl\|echTel1\|scaffold_283080 (42416-43635)
	1-456, gnl\|galGal2\|chr4 (85706015-85707236)
	1-456, gnl\|hg17\|chr2 (86742417-86743636)
	1-456, gnl\|Hg17\|chr2 (86742994-86742536)
	1-456, gnl\|loxAfr1\|scaffold_212117 (1212-4)
	1-456, gnl\|mm7\|chr6 (71528578-71527365)
	1-456, gnl\|Mm7\|chr6 (71528002-71528457)
	1-456, gnl\|monDom2\|scaffold_63 (864046-865235)
	1-456, gnl\|oryCun1\|scaffold_211666 (49610-48398)
	1-456, gnl\|panTro1\|chr12 (89625418-89626640)
	1-456, gnl\|rheMac2\|chr13 (87229138-87230356)
	1-456, gnl\|rn3\|chr4 (105022404-105021196)
	1-456, gnl\|xenTro1\|scaffold_149 (682244-683425)