Non-Coding RNA Search

Ova2-C0003275_B19

Sequence:


               
               CCCACGAGGGAGTTACTGATGATGGCATTGAGGACTCCTTTGAGGTTCTTGGTGAAATTC
AAGAAATTGAGAAAACTGGTCTGTGGGTAGGTGACTGCTTCATCTACACAAGTTCTGTGA
ACAGATTAAACTATTATGTGGGAGGCGATATTGTCACCATTGCCCACTTGGACAGGACAA
TGTACCTTCTGGGCTATATTCCAAAAGACAATAGGCTTTATCTGGGAGATAAACAATTGA
ACATAGTTAGCTACTCCCTGTTAGTTTCAGTCCTGGAATACCAAACTGCTGTCATGCGTA
GGGATTTCAGCATGGCTGATAAGGTGCTCCCTACTATCCCCAAAGAACAGAGGACCACAG
CTGCACACTTTTTGGAAAATCGGGGCTTCAAGCAGCAAGCACTCACAGTATCCACAGATC
CTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGAGGGAGTTACTGATGATGGCATTGAGGACTCCTTTGAGGTTCTTGGTGAAATTC
AAGAAATTGAGAAAACTGGTCTGTGGGTAGGTGACTGCTTCATCTACACAAGTTCTGTGA
ACAGATTAAACTATTATGTGGGAGGCGATATTGTCACCATTGCCCACTTGGACAGGACAA
TGTACCTTCTGGGCTATATTCCAAAAGACAATAGGCTTTATCTGGGAGATAAACAATTGA
ACATAGTTAGCTACTCCCTGTTAGTTTCAGTCCTGGAATACCAAACTGCTGTCATGCGTA
GGGATTTCAGCATGGCTGATAAGGTGCTCCCTACTATCCCCAAAGAACAGAGGACCACAG
CTGCACACTTTTTGGAAAATCGGGGCTTCAAGCAGCAAGCACTCACAGTATCCACAGATC
CTGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               172-290, + strand, RNAz p=0.783367

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               172-290, + strand, RNAz p=0.783367

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               172-384, gnl|bosTau2|chr1 (33330306-33330518)
               

               
               172-384, gnl|canFam2|chr23 (38596038-38596302)
               

               
               172-384, gnl|danRer3|chr2 (30504759-30505010)
               

               
               172-384, gnl|dasNov1|scaffold_6100 (98941-98680)
               

               
               172-384, gnl|fr1|chrUn (74779466-74779738)
               

               
               172-384, gnl|galGal2|chr9 (7764575-7764319)
               

               
               172-384, gnl|hg17|chr3 (140568091-140568352)
               

               
               172-384, gnl|Hg17|chr3 (140568319-140568107)
               

               
               172-384, gnl|loxAfr1|scaffold_7237 (53621-53356)
               

               
               172-384, gnl|mm7|chr9 (98224481-98224220)
               

               
               172-384, gnl|Mm7|chr9 (98224251-98224463)
               

               
               172-384, gnl|monDom2|scaffold_24 (34864866-34865119)
               

               
               172-384, gnl|oryCun1|scaffold_191121 (18754-19013)
               

               
               172-384, gnl|panTro1|chr2 (143090888-143091149)
               

               
               172-384, gnl|rheMac2|chr2 (148459904-148459639)
               

               
               172-384, gnl|tetNig1|chr15 (4191117-4190870)
               

               
               172-384, gnl|xenTro1|scaffold_108 (1097023-1096786)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-384, gnl|bosTau2|chr1 (33330306-33330518)
               

               
               172-384, gnl|canFam2|chr23 (38596038-38596302)
               

               
               172-384, gnl|danRer3|chr2 (30504759-30505010)
               

               
               172-384, gnl|dasNov1|scaffold_6100 (98941-98680)
               

               
               172-384, gnl|fr1|chrUn (74779466-74779738)
               

               
               172-384, gnl|galGal2|chr9 (7764575-7764319)
               

               
               172-384, gnl|hg17|chr3 (140568091-140568352)
               

               
               172-384, gnl|Hg17|chr3 (140568319-140568107)
               

               
               172-384, gnl|loxAfr1|scaffold_7237 (53621-53356)
               

               
               172-384, gnl|mm7|chr9 (98224481-98224220)
               

               
               172-384, gnl|Mm7|chr9 (98224251-98224463)
               

               
               172-384, gnl|monDom2|scaffold_24 (34864866-34865119)
               

               
               172-384, gnl|oryCun1|scaffold_191121 (18754-19013)
               

               
               172-384, gnl|panTro1|chr2 (143090888-143091149)
               

               
               172-384, gnl|rheMac2|chr2 (148459904-148459639)
               

               
               172-384, gnl|tetNig1|chr15 (4191117-4190870)
               

               
               172-384, gnl|xenTro1|scaffold_108 (1097023-1096786)

	172-384, gnl\|bosTau2\|chr1 (33330306-33330518)
	172-384, gnl\|canFam2\|chr23 (38596038-38596302)
	172-384, gnl\|danRer3\|chr2 (30504759-30505010)
	172-384, gnl\|dasNov1\|scaffold_6100 (98941-98680)
	172-384, gnl\|fr1\|chrUn (74779466-74779738)
	172-384, gnl\|galGal2\|chr9 (7764575-7764319)
	172-384, gnl\|hg17\|chr3 (140568091-140568352)
	172-384, gnl\|Hg17\|chr3 (140568319-140568107)
	172-384, gnl\|loxAfr1\|scaffold_7237 (53621-53356)
	172-384, gnl\|mm7\|chr9 (98224481-98224220)
	172-384, gnl\|Mm7\|chr9 (98224251-98224463)
	172-384, gnl\|monDom2\|scaffold_24 (34864866-34865119)
	172-384, gnl\|oryCun1\|scaffold_191121 (18754-19013)
	172-384, gnl\|panTro1\|chr2 (143090888-143091149)
	172-384, gnl\|rheMac2\|chr2 (148459904-148459639)
	172-384, gnl\|tetNig1\|chr15 (4191117-4190870)
	172-384, gnl\|xenTro1\|scaffold_108 (1097023-1096786)