Non-Coding RNA Search

Ova2-C0003275_J14

Sequence:


               
               TGGTCAGGCAGCAGCAGTAGCGGCAGCTCCAGTAGCAACAGCAGGAGCAGCAGCAGTAGC
AGCTCCGTGTCCAGTTCTTCCTACAGCTCCAGCTCAGGCAGCAGCTGCACGTCCTCTCGC
TCCTCCTCTCCTAAAAGGAAAAAGAGACACAGTAGGAGCAGGTCTCCCACAGTGAAAGCT
AGACGGAGCAGGAGCAGGAGCTACTCTCGCAGAATTAAAATAGACAGCAGCAGGACTAGG
GTGAAGCTGAGAGATAGGAGGAGATCTAATAGAAGTAGCATTGAAAGAGAAAGACGAAGA
AACCGGAGCCCTTCCCGAGACAGACGTAGAAGCAGAAGTCGCTCAAGGGATAGACGAACC
AATCGTTCCAGTCGCAGTAGAAGTCGAGAATAGGCGTAAATTGAGGATCCACGTGGAAAT
CTTAGTGGGAACAGTCATAAACATAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCAGGCAGCAGCAGTAGCGGCAGCTCCAGTAGCAACAGCAGGAGCAGCAGCAGTAGC
AGCTCCGTGTCCAGTTCTTCCTACAGCTCCAGCTCAGGCAGCAGCTGCACGTCCTCTCGC
TCCTCCTCTCCTAAAAGGAAAAAGAGACACAGTAGGAGCAGGTCTCCCACAGTGAAAGCT
AGACGGAGCAGGAGCAGGAGCTACTCTCGCAGAATTAAAATAGACAGCAGCAGGACTAGG
GTGAAGCTGAGAGATAGGAGGAGATCTAATAGAAGTAGCATTGAAAGAGAAAGACGAAGA
AACCGGAGCCCTTCCCGAGACAGACGTAGAAGCAGAAGTCGCTCAAGGGATAGACGAACC
AATCGTTCCAGTCGCAGTAGAAGTCGAGAATAGGCGTAAATTGAGGATCCACGTGGAAAT
CTTAGTGGGAACAGTCATAAACATAAAGG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               83-322, - strand, RNAz p=0.886765

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               83-322, - strand, RNAz p=0.886765

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               4-449, gnl|bosTau2|chr9 (33690001-33689556)
               

               
               4-449, gnl|canFam2|chr12 (60611612-60612020)
               

               
               4-449, gnl|danRer3|chr6 (10098938-10098587)
               

               
               4-449, gnl|echTel1|scaffold_212643 (7632-7229)
               

               
               4-449, gnl|fr1|chrUn (260842273-260842711)
               

               
               4-449, gnl|galGal2|chr3 (69869418-69869012)
               

               
               4-449, gnl|hg17|chr6 (99955576-99955984)
               

               
               4-449, gnl|Hg17|chr6 (99956027-99955582)
               

               
               4-449, gnl|loxAfr1|scaffold_159907 (535-943)
               

               
               4-449, gnl|mm7|chr4 (21877896-21877488)
               

               
               4-449, gnl|Mm7|chr4 (21877443-21877888)
               

               
               4-449, gnl|monDom2|scaffold_0 (124495945-124495537)
               

               
               4-449, gnl|oryCun1|scaffold_213419 (36429-36021)
               

               
               4-449, gnl|panTro1|chr5 (101941744-101942152)
               

               
               4-449, gnl|rheMac2|chr4 (95343470-95343878)
               

               
               4-449, gnl|rn3|chr5 (36623299-36622891)
               

               
               4-449, gnl|xenTro1|scaffold_164 (1922407-1922778)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-449, gnl|bosTau2|chr9 (33690001-33689556)
               

               
               4-449, gnl|canFam2|chr12 (60611612-60612020)
               

               
               4-449, gnl|danRer3|chr6 (10098938-10098587)
               

               
               4-449, gnl|echTel1|scaffold_212643 (7632-7229)
               

               
               4-449, gnl|fr1|chrUn (260842273-260842711)
               

               
               4-449, gnl|galGal2|chr3 (69869418-69869012)
               

               
               4-449, gnl|hg17|chr6 (99955576-99955984)
               

               
               4-449, gnl|Hg17|chr6 (99956027-99955582)
               

               
               4-449, gnl|loxAfr1|scaffold_159907 (535-943)
               

               
               4-449, gnl|mm7|chr4 (21877896-21877488)
               

               
               4-449, gnl|Mm7|chr4 (21877443-21877888)
               

               
               4-449, gnl|monDom2|scaffold_0 (124495945-124495537)
               

               
               4-449, gnl|oryCun1|scaffold_213419 (36429-36021)
               

               
               4-449, gnl|panTro1|chr5 (101941744-101942152)
               

               
               4-449, gnl|rheMac2|chr4 (95343470-95343878)
               

               
               4-449, gnl|rn3|chr5 (36623299-36622891)
               

               
               4-449, gnl|xenTro1|scaffold_164 (1922407-1922778)

	4-449, gnl\|bosTau2\|chr9 (33690001-33689556)
	4-449, gnl\|canFam2\|chr12 (60611612-60612020)
	4-449, gnl\|danRer3\|chr6 (10098938-10098587)
	4-449, gnl\|echTel1\|scaffold_212643 (7632-7229)
	4-449, gnl\|fr1\|chrUn (260842273-260842711)
	4-449, gnl\|galGal2\|chr3 (69869418-69869012)
	4-449, gnl\|hg17\|chr6 (99955576-99955984)
	4-449, gnl\|Hg17\|chr6 (99956027-99955582)
	4-449, gnl\|loxAfr1\|scaffold_159907 (535-943)
	4-449, gnl\|mm7\|chr4 (21877896-21877488)
	4-449, gnl\|Mm7\|chr4 (21877443-21877888)
	4-449, gnl\|monDom2\|scaffold_0 (124495945-124495537)
	4-449, gnl\|oryCun1\|scaffold_213419 (36429-36021)
	4-449, gnl\|panTro1\|chr5 (101941744-101942152)
	4-449, gnl\|rheMac2\|chr4 (95343470-95343878)
	4-449, gnl\|rn3\|chr5 (36623299-36622891)
	4-449, gnl\|xenTro1\|scaffold_164 (1922407-1922778)