Non-Coding RNA Search

Ova2-C0003275_K11

Sequence:


               
               GCTGACAGGGGCCCTGGCTACAGCTTGTGGAGATGATGCCATCCGAGTGTTTGAGGAAGA
TCCAGGCTCAGACCCACAGCAGCCCACCTTCTCTTTGACAGCCCATCTTCGTCAGGCCCA
TTCCCAGGATGTCAACTGTGTGGCTTGGAACCCCAAGGAGGCAGGGCTCCTGGCCTCTTG
TAGTGATGATGGGGAGGTAGCCTTCTGGGAGTATCATCAGCCTGCAGGTCTCTGAGCTGC
AGCTTGACTTGGGGATCTTGATTCCCACAGAAAATGTCCTAAGACTTTTCCTAGTCACTG
AGAAGACCTGAAGCATCCTTGACTTTCATTTAGCTCAGGACCATTCACTGTTTCCCTTGA
TGTGAGAAAGCCATTGGACAGAGCCACGGAACAGCAGAATATTAAATATTTAATATTTAA
TATTAAATATTAAAGTTTTGCTTGATTTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGACAGGGGCCCTGGCTACAGCTTGTGGAGATGATGCCATCCGAGTGTTTGAGGAAGA
TCCAGGCTCAGACCCACAGCAGCCCACCTTCTCTTTGACAGCCCATCTTCGTCAGGCCCA
TTCCCAGGATGTCAACTGTGTGGCTTGGAACCCCAAGGAGGCAGGGCTCCTGGCCTCTTG
TAGTGATGATGGGGAGGTAGCCTTCTGGGAGTATCATCAGCCTGCAGGTCTCTGAGCTGC
AGCTTGACTTGGGGATCTTGATTCCCACAGAAAATGTCCTAAGACTTTTCCTAGTCACTG
AGAAGACCTGAAGCATCCTTGACTTTCATTTAGCTCAGGACCATTCACTGTTTCCCTTGA
TGTGAGAAAGCCATTGGACAGAGCCACGGAACAGCAGAATATTAAATATTTAATATTTAA
TATTAAATATTAAAGTTTTGCTTGATTTAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.788168

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.788168

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               114-203, + strand, RNAmicro p=0.970033

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               114-203, + strand, RNAmicro p=0.970033

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004804, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004804, +

Aligned organism(s): 18 entry(ies)

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Aligned organism(s): 18 entry(ies)

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               1-332, gnl|bosTau2|chr11 (1743288-1742954)
               

               
               1-332, gnl|canFam2|chr17 (37618043-37617814)
               

               
               1-332, gnl|danRer3|chr16 (14946875-14946652)
               

               
               1-332, gnl|dasNov1|scaffold_168949 (3728-3499)
               

               
               1-332, gnl|fr1|chrUn (264992079-264991868)
               

               
               1-332, gnl|galGal2|chrUn (125145824-125145599)
               

               
               1-332, gnl|hg17|chr2 (96358712-96358941)
               

               
               1-332, gnl|Hg17|chr2 (96358729-96359066)
               

               
               1-332, gnl|loxAfr1|scaffold_1969 (47504-47733)
               

               
               1-332, gnl|mm7|chr2 (126983909-126983674)
               

               
               1-332, gnl|Mm7|chr2 (126983884-126983557)
               

               
               1-332, gnl|monDom2|scaffold_1 (67349222-67349451)
               

               
               1-332, gnl|oryCun1|scaffold_209610 (107850-108079)
               

               
               1-332, gnl|panTro1|chr12 (99371293-99371522)
               

               
               1-332, gnl|rheMac2|chr13 (96771825-96772054)
               

               
               1-332, gnl|rn3|chr3 (114646843-114646608)
               

               
               1-332, gnl|tetNig1|chrUn_random (33194613-33194842)
               

               
               1-332, gnl|xenTro1|scaffold_407 (13599-13370)

Aligned organism(s): 18 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-332, gnl|bosTau2|chr11 (1743288-1742954)
               

               
               1-332, gnl|canFam2|chr17 (37618043-37617814)
               

               
               1-332, gnl|danRer3|chr16 (14946875-14946652)
               

               
               1-332, gnl|dasNov1|scaffold_168949 (3728-3499)
               

               
               1-332, gnl|fr1|chrUn (264992079-264991868)
               

               
               1-332, gnl|galGal2|chrUn (125145824-125145599)
               

               
               1-332, gnl|hg17|chr2 (96358712-96358941)
               

               
               1-332, gnl|Hg17|chr2 (96358729-96359066)
               

               
               1-332, gnl|loxAfr1|scaffold_1969 (47504-47733)
               

               
               1-332, gnl|mm7|chr2 (126983909-126983674)
               

               
               1-332, gnl|Mm7|chr2 (126983884-126983557)
               

               
               1-332, gnl|monDom2|scaffold_1 (67349222-67349451)
               

               
               1-332, gnl|oryCun1|scaffold_209610 (107850-108079)
               

               
               1-332, gnl|panTro1|chr12 (99371293-99371522)
               

               
               1-332, gnl|rheMac2|chr13 (96771825-96772054)
               

               
               1-332, gnl|rn3|chr3 (114646843-114646608)
               

               
               1-332, gnl|tetNig1|chrUn_random (33194613-33194842)
               

               
               1-332, gnl|xenTro1|scaffold_407 (13599-13370)

	1-332, gnl\|bosTau2\|chr11 (1743288-1742954)
	1-332, gnl\|canFam2\|chr17 (37618043-37617814)
	1-332, gnl\|danRer3\|chr16 (14946875-14946652)
	1-332, gnl\|dasNov1\|scaffold_168949 (3728-3499)
	1-332, gnl\|fr1\|chrUn (264992079-264991868)
	1-332, gnl\|galGal2\|chrUn (125145824-125145599)
	1-332, gnl\|hg17\|chr2 (96358712-96358941)
	1-332, gnl\|Hg17\|chr2 (96358729-96359066)
	1-332, gnl\|loxAfr1\|scaffold_1969 (47504-47733)
	1-332, gnl\|mm7\|chr2 (126983909-126983674)
	1-332, gnl\|Mm7\|chr2 (126983884-126983557)
	1-332, gnl\|monDom2\|scaffold_1 (67349222-67349451)
	1-332, gnl\|oryCun1\|scaffold_209610 (107850-108079)
	1-332, gnl\|panTro1\|chr12 (99371293-99371522)
	1-332, gnl\|rheMac2\|chr13 (96771825-96772054)
	1-332, gnl\|rn3\|chr3 (114646843-114646608)
	1-332, gnl\|tetNig1\|chrUn_random (33194613-33194842)
	1-332, gnl\|xenTro1\|scaffold_407 (13599-13370)