Non-Coding RNA Search

Ova2-C0003275_O06

Sequence:


               
               GAGGCCCAGCAGATGTATGGCGGAAAGGAAGCCAGGACGGAGGAGATGAAGTGGCGGCAG
TGGGCGGATGACTGGCTGGTGCATCTCATCTCTCCCAACGTGTACCGAACACCTGCCGAG
GCCCTGGCTTCCTTCGACTATATTGTCCGTGAGGGCAAGTTTGGGGCTGTGGAGGCCACC
ATGGCCAAGTACGTGGGCGCAGCTGCCATGTACTTCATCAGCAAGCGCCTCAAAAGCAGG
CACCACCTGCAGGATGATGTCCGGGTAGACCTCTATGAAGCAGCCAACAAGTGGGTGACA
GCCGTGGGCAAAGACCGGCCATTCATGGGGGGTCAGAAGCCTAACCTTGCTGACCTGGCA
GTGTATGGTGTGCTGCGAGTGATGGAGGGTCTGGGAGCCTTTGACGACCTGATGCGACAC
TCACACATCCAGCCTTGGTACCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGCCCAGCAGATGTATGGCGGAAAGGAAGCCAGGACGGAGGAGATGAAGTGGCGGCAG
TGGGCGGATGACTGGCTGGTGCATCTCATCTCTCCCAACGTGTACCGAACACCTGCCGAG
GCCCTGGCTTCCTTCGACTATATTGTCCGTGAGGGCAAGTTTGGGGCTGTGGAGGCCACC
ATGGCCAAGTACGTGGGCGCAGCTGCCATGTACTTCATCAGCAAGCGCCTCAAAAGCAGG
CACCACCTGCAGGATGATGTCCGGGTAGACCTCTATGAAGCAGCCAACAAGTGGGTGACA
GCCGTGGGCAAAGACCGGCCATTCATGGGGGGTCAGAAGCCTAACCTTGCTGACCTGGCA
GTGTATGGTGTGCTGCGAGTGATGGAGGGTCTGGGAGCCTTTGACGACCTGATGCGACAC
TCACACATCCAGCCTTGGTACCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|40068473|ref|NP_945178.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|40068473|ref|NP_945178.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               110-229, + strand, RNAz p=0.884578

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               110-229, + strand, RNAz p=0.884578

Aligned organism(s): 17 entry(ies)

More info

Aligned organism(s): 17 entry(ies)

Help | Less info


               
               31-240, gnl|bosTau2|chr11 (77616941-77616732)
               

               
               31-240, gnl|canFam2|chr9 (58691796-58691520)
               

               
               31-240, gnl|danRer3|chr8 (23959933-23959716)
               

               
               31-240, gnl|echTel1|scaffold_130978 (395-621)
               

               
               31-240, gnl|fr1|chrUn (245193550-245193765)
               

               
               31-240, gnl|galGal2|chr17 (5646414-5646653)
               

               
               31-240, gnl|hg17|chr9 (127964740-127964981)
               

               
               31-240, gnl|Hg17|chr9 (127964975-127964766)
               

               
               31-240, gnl|loxAfr1|scaffold_8335 (67090-66833)
               

               
               31-240, gnl|mm7|chr2 (32408433-32408181)
               

               
               31-240, gnl|Mm7|chr2 (32408181-32408390)
               

               
               31-240, gnl|monDom2|scaffold_51 (2655514-2655739)
               

               
               31-240, gnl|panTro1|chr11 (112794905-112795147)
               

               
               31-240, gnl|rheMac2|chr15 (98440963-98440722)
               

               
               31-240, gnl|rn3|chr3 (11423227-11422972)
               

               
               31-240, gnl|tetNig1|chr12 (10059307-10059082)
               

               
               31-240, gnl|xenTro1|scaffold_82 (421225-420996)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-240, gnl|bosTau2|chr11 (77616941-77616732)
               

               
               31-240, gnl|canFam2|chr9 (58691796-58691520)
               

               
               31-240, gnl|danRer3|chr8 (23959933-23959716)
               

               
               31-240, gnl|echTel1|scaffold_130978 (395-621)
               

               
               31-240, gnl|fr1|chrUn (245193550-245193765)
               

               
               31-240, gnl|galGal2|chr17 (5646414-5646653)
               

               
               31-240, gnl|hg17|chr9 (127964740-127964981)
               

               
               31-240, gnl|Hg17|chr9 (127964975-127964766)
               

               
               31-240, gnl|loxAfr1|scaffold_8335 (67090-66833)
               

               
               31-240, gnl|mm7|chr2 (32408433-32408181)
               

               
               31-240, gnl|Mm7|chr2 (32408181-32408390)
               

               
               31-240, gnl|monDom2|scaffold_51 (2655514-2655739)
               

               
               31-240, gnl|panTro1|chr11 (112794905-112795147)
               

               
               31-240, gnl|rheMac2|chr15 (98440963-98440722)
               

               
               31-240, gnl|rn3|chr3 (11423227-11422972)
               

               
               31-240, gnl|tetNig1|chr12 (10059307-10059082)
               

               
               31-240, gnl|xenTro1|scaffold_82 (421225-420996)

	31-240, gnl\|bosTau2\|chr11 (77616941-77616732)
	31-240, gnl\|canFam2\|chr9 (58691796-58691520)
	31-240, gnl\|danRer3\|chr8 (23959933-23959716)
	31-240, gnl\|echTel1\|scaffold_130978 (395-621)
	31-240, gnl\|fr1\|chrUn (245193550-245193765)
	31-240, gnl\|galGal2\|chr17 (5646414-5646653)
	31-240, gnl\|hg17\|chr9 (127964740-127964981)
	31-240, gnl\|Hg17\|chr9 (127964975-127964766)
	31-240, gnl\|loxAfr1\|scaffold_8335 (67090-66833)
	31-240, gnl\|mm7\|chr2 (32408433-32408181)
	31-240, gnl\|Mm7\|chr2 (32408181-32408390)
	31-240, gnl\|monDom2\|scaffold_51 (2655514-2655739)
	31-240, gnl\|panTro1\|chr11 (112794905-112795147)
	31-240, gnl\|rheMac2\|chr15 (98440963-98440722)
	31-240, gnl\|rn3\|chr3 (11423227-11422972)
	31-240, gnl\|tetNig1\|chr12 (10059307-10059082)
	31-240, gnl\|xenTro1\|scaffold_82 (421225-420996)