Non-Coding RNA Search

Ova2-C0003276_C20

Sequence:


               
               GGAGCTGGCTTGTGGAGTGTGTCTCCTAAATGTGGACTCCAGAAGCCGGAAAGAAGAGAC
ACCTGCAGAAGAACAGCCTAAAAAAGCATTCAACTCAGAAACAGACAGTTTCAAGCTGGC
CTATGGGGGACATCAGTACCACGCCAGCTGTGCCAACTTCTGGATCAACTGTGTTGAACC
CAAGCCTCCCGGCCTCCTCTTGCCAGATCTGCTCTGAAAAGCTGCTCAGTGAAGCTGATT
TTGGGTTGATTCTGTCACAGGACTTAGGGTGACAGGGATCAATAAATAGAATGCAGTACT
GCAGAGCCCCTCCCACCGGTCTCTTTGCCGCATTCCCCAGGAGGCAGGCTGCAAAGCTGC
AGTGGAGGGCCCCACCACAAAACCTTCCATCACTACTTCAGCCTGCCGCTCTTTGAGACT
TGAGGTAAACTATTGGACCCGAACTGCACGTGGCACTGGACACTTGCTTGCTTATCTCCT
CTGGCGTTGTTGTTGTTGATGGTGATGTTGGTTTGATTTTCCTTTTAAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCTGGCTTGTGGAGTGTGTCTCCTAAATGTGGACTCCAGAAGCCGGAAAGAAGAGAC
ACCTGCAGAAGAACAGCCTAAAAAAGCATTCAACTCAGAAACAGACAGTTTCAAGCTGGC
CTATGGGGGACATCAGTACCACGCCAGCTGTGCCAACTTCTGGATCAACTGTGTTGAACC
CAAGCCTCCCGGCCTCCTCTTGCCAGATCTGCTCTGAAAAGCTGCTCAGTGAAGCTGATT
TTGGGTTGATTCTGTCACAGGACTTAGGGTGACAGGGATCAATAAATAGAATGCAGTACT
GCAGAGCCCCTCCCACCGGTCTCTTTGCCGCATTCCCCAGGAGGCAGGCTGCAAAGCTGC
AGTGGAGGGCCCCACCACAAAACCTTCCATCACTACTTCAGCCTGCCGCTCTTTGAGACT
TGAGGTAAACTATTGGACCCGAACTGCACGTGGCACTGGACACTTGCTTGCTTATCTCCT
CTGGCGTTGTTGTTGTTGATGGTGATGTTGGTTTGATTTTCCTTTTAAAACA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61821747|ref|XP_583882.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61821747|ref|XP_583882.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               296-407, - strand, RNAz p=0.634235

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               296-407, - strand, RNAz p=0.634235

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               86-478, gnl|bosTau2|chr19 (7057519-7057934)
               

               
               86-478, gnl|canFam2|chr9 (40601448-40601713)
               

               
               86-478, gnl|echTel1|scaffold_311889 (288-21)
               

               
               86-478, gnl|hg17|chr17 (32952933-32953144)
               

               
               86-478, gnl|Hg17|chr17 (32953287-32952930)
               

               
               86-478, gnl|loxAfr1|scaffold_17665 (42653-42926)
               

               
               86-478, gnl|mm7|chr11 (84111076-84110850)
               

               
               86-478, gnl|Mm7|chr11 (84110705-84111238)
               

               
               86-478, gnl|monDom2|scaffold_135 (920289-919980)
               

               
               86-478, gnl|oryCun1|scaffold_204781 (76908-77166)
               

               
               86-478, gnl|panTro1|chr19 (36133120-36133332)
               

               
               86-478, gnl|rheMac2|chr16 (47521897-47522107)
               

               
               86-478, gnl|rn3|chr10 (72344666-72344420)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               86-478, gnl|bosTau2|chr19 (7057519-7057934)
               

               
               86-478, gnl|canFam2|chr9 (40601448-40601713)
               

               
               86-478, gnl|echTel1|scaffold_311889 (288-21)
               

               
               86-478, gnl|hg17|chr17 (32952933-32953144)
               

               
               86-478, gnl|Hg17|chr17 (32953287-32952930)
               

               
               86-478, gnl|loxAfr1|scaffold_17665 (42653-42926)
               

               
               86-478, gnl|mm7|chr11 (84111076-84110850)
               

               
               86-478, gnl|Mm7|chr11 (84110705-84111238)
               

               
               86-478, gnl|monDom2|scaffold_135 (920289-919980)
               

               
               86-478, gnl|oryCun1|scaffold_204781 (76908-77166)
               

               
               86-478, gnl|panTro1|chr19 (36133120-36133332)
               

               
               86-478, gnl|rheMac2|chr16 (47521897-47522107)
               

               
               86-478, gnl|rn3|chr10 (72344666-72344420)

	86-478, gnl\|bosTau2\|chr19 (7057519-7057934)
	86-478, gnl\|canFam2\|chr9 (40601448-40601713)
	86-478, gnl\|echTel1\|scaffold_311889 (288-21)
	86-478, gnl\|hg17\|chr17 (32952933-32953144)
	86-478, gnl\|Hg17\|chr17 (32953287-32952930)
	86-478, gnl\|loxAfr1\|scaffold_17665 (42653-42926)
	86-478, gnl\|mm7\|chr11 (84111076-84110850)
	86-478, gnl\|Mm7\|chr11 (84110705-84111238)
	86-478, gnl\|monDom2\|scaffold_135 (920289-919980)
	86-478, gnl\|oryCun1\|scaffold_204781 (76908-77166)
	86-478, gnl\|panTro1\|chr19 (36133120-36133332)
	86-478, gnl\|rheMac2\|chr16 (47521897-47522107)
	86-478, gnl\|rn3\|chr10 (72344666-72344420)