Non-Coding RNA Search

Ova2-C0003276_J08

Sequence:


               
               GCGGCTCGAGCCACCATGGAACATGGCCCGTGTGTTGCAGAATCAGAACCAGCTTTTCTG
TCGGGGAGCAAGCAGTTCGGGCTTTCCAGAAACAGCCACATTGCTCTCGCTTTTGATGAC
ACCAAAGTTAAAAACCGCCTCACCATTGAGCTGGAAGAGCGAACTGAGGCTGAATCAGGC
TTACTCTTTTACATGGCTCGGATCAATCATGCAGATTTTGCTACTGTTCAGCTGAGGAAT
GGCTTCCCCTACTTCAGTTATGATCTGGGGAGCGGGGACACAAGCACCATGATCCCCACC
CAAATCAACGATGGCCAGTGGCACAAGATTAAGATTACGAGAGTGAAGCAGGAGGGAATT
CTTTCTGTAGATGACGCCTCCAACCAAACCATCAGTCCCAAGAAAGCTGACATCCTGGAT
GTTGTGTGGATTCTGTATGTTAGTGGCTTGCCGATCAACTATACCACAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGCCACCATGGAACATGGCCCGTGTGTTGCAGAATCAGAACCAGCTTTTCTG
TCGGGGAGCAAGCAGTTCGGGCTTTCCAGAAACAGCCACATTGCTCTCGCTTTTGATGAC
ACCAAAGTTAAAAACCGCCTCACCATTGAGCTGGAAGAGCGAACTGAGGCTGAATCAGGC
TTACTCTTTTACATGGCTCGGATCAATCATGCAGATTTTGCTACTGTTCAGCTGAGGAAT
GGCTTCCCCTACTTCAGTTATGATCTGGGGAGCGGGGACACAAGCACCATGATCCCCACC
CAAATCAACGATGGCCAGTGGCACAAGATTAAGATTACGAGAGTGAAGCAGGAGGGAATT
CTTTCTGTAGATGACGCCTCCAACCAAACCATCAGTCCCAAGAAAGCTGACATCCTGGAT
GTTGTGTGGATTCTGTATGTTAGTGGCTTGCCGATCAACTATACCACAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               213-332, + strand, RNAz p=0.877836

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-332, + strand, RNAz p=0.877836

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               134-351, gnl|bosTau2|chr9 (38014970-38015187)
               

               
               134-351, gnl|Hg17|chr6 (129865925-129866143)
               

               
               134-351, gnl|Mm7|chr10 (26745292-26745075)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               134-351, gnl|bosTau2|chr9 (38014970-38015187)
               

               
               134-351, gnl|Hg17|chr6 (129865925-129866143)
               

               
               134-351, gnl|Mm7|chr10 (26745292-26745075)

	134-351, gnl\|bosTau2\|chr9 (38014970-38015187)
	134-351, gnl\|Hg17\|chr6 (129865925-129866143)
	134-351, gnl\|Mm7\|chr10 (26745292-26745075)