Non-Coding RNA Search

Ova2-C0003276_K14

Sequence:


               
               GTCCGTTGGATTTCCTACAAGTTGGTCAGTGAGATGGTGAAGAAGCTACACATGGCGACG
CCGCCAACGTTCGGAGTCGAGCTCATCAATGAGCTGGTGGAGAACTTCGGCAGGTGTCCA
AAGTGGTCGGGCCGGCAGGCCTTCGTCTTCGTGTGCCAGACTGTCATTGAGGACGACTGC
CTCCCCATGGACCAGTTTGCTGTGCACCTGATGCCACATTTGCTGACCTTGGCAAATGAC
AGGGTTCCCAACGTTAGAGTGCTGCTTGCAAAAACCCTTCGACAGACTCTACTAGAGAAA
GAATACTTCTTAGCCTCTGCCAGCTGTCATCAGGAGGCCGTGGAGCAGACAATCATGGCC
CTTCAGATGGATCGAGACAGTGACGTCAAGTACTTTGCAAGCATCCACCCGTCCAGTACC
AAACTCTCTGAAGACGCAATGAGTACAGCTTCCTCCACCTACTGACCCCTGACCCACGGT
GTCCTTCCTGCATCCGCGAGAGCCCTGGCTCAGCCGCCTGCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCGTTGGATTTCCTACAAGTTGGTCAGTGAGATGGTGAAGAAGCTACACATGGCGACG
CCGCCAACGTTCGGAGTCGAGCTCATCAATGAGCTGGTGGAGAACTTCGGCAGGTGTCCA
AAGTGGTCGGGCCGGCAGGCCTTCGTCTTCGTGTGCCAGACTGTCATTGAGGACGACTGC
CTCCCCATGGACCAGTTTGCTGTGCACCTGATGCCACATTTGCTGACCTTGGCAAATGAC
AGGGTTCCCAACGTTAGAGTGCTGCTTGCAAAAACCCTTCGACAGACTCTACTAGAGAAA
GAATACTTCTTAGCCTCTGCCAGCTGTCATCAGGAGGCCGTGGAGCAGACAATCATGGCC
CTTCAGATGGATCGAGACAGTGACGTCAAGTACTTTGCAAGCATCCACCCGTCCAGTACC
AAACTCTCTGAAGACGCAATGAGTACAGCTTCCTCCACCTACTGACCCCTGACCCACGGT
GTCCTTCCTGCATCCGCGAGAGCCCTGGCTCAGCCGCCTGCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|1710229|gb|AAB50211.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1710229|gb|AAB50211.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               339-458, - strand, RNAz p=0.737929

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               339-458, - strand, RNAz p=0.737929

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               24-159, gnl|bosTau2|chr24 (31748137-31748272)
               

               
               24-159, gnl|Hg17|chr18 (9540185-9540050)
               

               
               24-159, gnl|Mm7|chr17 (64055422-64055557)
               


               
               300-463, gnl|bosTau2|chr24 (31749448-31749611)
               

               
               300-463, gnl|Hg17|chr18 (9537952-9537789)
               

               
               300-463, gnl|Mm7|chr17 (64058388-64058551)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               24-159, gnl|bosTau2|chr24 (31748137-31748272)
               

               
               24-159, gnl|Hg17|chr18 (9540185-9540050)
               

               
               24-159, gnl|Mm7|chr17 (64055422-64055557)
               


               
               300-463, gnl|bosTau2|chr24 (31749448-31749611)
               

               
               300-463, gnl|Hg17|chr18 (9537952-9537789)
               

               
               300-463, gnl|Mm7|chr17 (64058388-64058551)

	24-159, gnl\|bosTau2\|chr24 (31748137-31748272)
	24-159, gnl\|Hg17\|chr18 (9540185-9540050)
	24-159, gnl\|Mm7\|chr17 (64055422-64055557)

	300-463, gnl\|bosTau2\|chr24 (31749448-31749611)
	300-463, gnl\|Hg17\|chr18 (9537952-9537789)
	300-463, gnl\|Mm7\|chr17 (64058388-64058551)