Non-Coding RNA Search

Ova2-C0003276_N17

Sequence:


               
               TCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAGGAGTCTGTTCTCACCACCATGG
ACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGACCTGGCCTGGGTACCAT
TCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGATTGCCCA
TGGCCTTGCTCATCTGCCTCATTAAGGCTGTTGGTTACTACATCTTCCGAGGGGCCAATT
CCCAGAAAAATACATTCAGAAAGAATCCTTCTGACCCCAGTGTGGCTGGTCTTGAGACCA
TCCCTACTGCCACAAGGAGGCAGCTGTTGGTGTCTGGGTGGTGGGGTATGGTTCGACACC
CCAACTACCTGGGAGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGGGCTGTCCC
ACCTGCTGCCCTACTTCTACCTGCTCTACTTCACTGCACTGCTGGTGCACCGCGAGGCCC
GAGATGAGCAGCAGTGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGTTGCTGTATGTGGGTGATGCCCTCTGGTATGAGGAGTCTGTTCTCACCACCATGG
ACATAATACATGATGGTTTTGGCTTCATGCTGGTCTTTGGAGACCTGGCCTGGGTACCAT
TCACCTACAGCCTGCAGGCCCAGTTCCTGTTGTACCATCCACAGCCTCTGGGATTGCCCA
TGGCCTTGCTCATCTGCCTCATTAAGGCTGTTGGTTACTACATCTTCCGAGGGGCCAATT
CCCAGAAAAATACATTCAGAAAGAATCCTTCTGACCCCAGTGTGGCTGGTCTTGAGACCA
TCCCTACTGCCACAAGGAGGCAGCTGTTGGTGTCTGGGTGGTGGGGTATGGTTCGACACC
CCAACTACCTGGGAGACCTCATCATGGCTCTGGCTTGGTCCTTGCCCTGTGGGCTGTCCC
ACCTGCTGCCCTACTTCTACCTGCTCTACTTCACTGCACTGCTGGTGCACCGCGAGGCCC
GAGATGAGCAGCAGTGCCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|20810127|gb|AAH29171.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|20810127|gb|AAH29171.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               88-412, + strand, RNAz p=0.933869

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               88-412, + strand, RNAz p=0.933869

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               37-205, gnl|bosTau2|chr29 (34238570-34238738)
               

               
               37-205, gnl|Hg17|chr11 (64638959-64639127)
               

               
               37-205, gnl|Mm7|chr19 (5958798-5958630)
               


               
               310-412, gnl|bosTau2|chr14 (36225160-36225058)
               

               
               310-412, gnl|Hg17|chr11 (64639545-64639647)
               

               
               310-412, gnl|Mm7|chr19 (5958231-5958129)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               37-205, gnl|bosTau2|chr29 (34238570-34238738)
               

               
               37-205, gnl|Hg17|chr11 (64638959-64639127)
               

               
               37-205, gnl|Mm7|chr19 (5958798-5958630)
               


               
               310-412, gnl|bosTau2|chr14 (36225160-36225058)
               

               
               310-412, gnl|Hg17|chr11 (64639545-64639647)
               

               
               310-412, gnl|Mm7|chr19 (5958231-5958129)

	37-205, gnl\|bosTau2\|chr29 (34238570-34238738)
	37-205, gnl\|Hg17\|chr11 (64638959-64639127)
	37-205, gnl\|Mm7\|chr19 (5958798-5958630)

	310-412, gnl\|bosTau2\|chr14 (36225160-36225058)
	310-412, gnl\|Hg17\|chr11 (64639545-64639647)
	310-412, gnl\|Mm7\|chr19 (5958231-5958129)