Non-Coding RNA Search

Ova2-C0003276_P04

Sequence:


               
               CCGCGGTGGACACGTACTGCAGACACAACTACGAGATTTTTGATAGATTCCTTGTGCCGC
GGAGAGTTGAACCCAAGGTGACCGTGTACCCTTCAAAGACGCAGCCCCTGGAACACCACA
ACCTCCTGGTCTGCTCTGTGAGTGACTTCTACCCTGGCAGCATTGAAGTCAGATGGTTCC
GGAATGGCAAGGAGGAAAAGGATGGACTCGTGTCCACCGGCCTGATCCGAAATGGAGATT
GGACCTTCCAGTTGCTGGTGATGCTGGAGACGGTTCCTCAAGGTGGAGAGGTTTACACCT
GCCAGGTGGAGCATCCAAGCCTGCCCAGCCCTGTCAGAGTGGAGTGGAAAGCACAGTCCA
CGTCTGCACAAAATAAGAAGATGAGTGGAGTCGGGGGCATCGTGCTGGGTCTGCTCTTCC
TGGGAGCCGGGCTGTTCGTCTACTTCAGGAGCCAGAAAGGACAGTCTGGACTTCAGCCAA
CAGGACTCCTGAACTGAGGTGAGGTGACAAGGCTGAAAGAAGGCGTTCTCCCACTGTCAC
CATGTCTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGTGGACACGTACTGCAGACACAACTACGAGATTTTTGATAGATTCCTTGTGCCGC
GGAGAGTTGAACCCAAGGTGACCGTGTACCCTTCAAAGACGCAGCCCCTGGAACACCACA
ACCTCCTGGTCTGCTCTGTGAGTGACTTCTACCCTGGCAGCATTGAAGTCAGATGGTTCC
GGAATGGCAAGGAGGAAAAGGATGGACTCGTGTCCACCGGCCTGATCCGAAATGGAGATT
GGACCTTCCAGTTGCTGGTGATGCTGGAGACGGTTCCTCAAGGTGGAGAGGTTTACACCT
GCCAGGTGGAGCATCCAAGCCTGCCCAGCCCTGTCAGAGTGGAGTGGAAAGCACAGTCCA
CGTCTGCACAAAATAAGAAGATGAGTGGAGTCGGGGGCATCGTGCTGGGTCTGCTCTTCC
TGGGAGCCGGGCTGTTCGTCTACTTCAGGAGCCAGAAAGGACAGTCTGGACTTCAGCCAA
CAGGACTCCTGAACTGAGGTGAGGTGACAAGGCTGAAAGAAGGCGTTCTCCCACTGTCAC
CATGTCTTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|70120|pir||HLMSE2

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|70120|pir||HLMSE2

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               144-303, + strand, RNAz p=0.839476

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               144-303, + strand, RNAz p=0.839476

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               65-348, gnl|bosTau2|chr23 (21244785-21245068)
               

               
               65-348, gnl|Hg17|chr6 (32657595-32657312)
               

               
               65-348, gnl|Mm7|chr17 (32391493-32391776)
               


               
               351-460, gnl|bosTau2|chr23 (21245814-21245923)
               

               
               351-460, gnl|Hg17|chr6 (32656609-32656500)
               

               
               351-460, gnl|Mm7|chr17 (32392370-32392479)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               65-348, gnl|bosTau2|chr23 (21244785-21245068)
               

               
               65-348, gnl|Hg17|chr6 (32657595-32657312)
               

               
               65-348, gnl|Mm7|chr17 (32391493-32391776)
               


               
               351-460, gnl|bosTau2|chr23 (21245814-21245923)
               

               
               351-460, gnl|Hg17|chr6 (32656609-32656500)
               

               
               351-460, gnl|Mm7|chr17 (32392370-32392479)

	65-348, gnl\|bosTau2\|chr23 (21244785-21245068)
	65-348, gnl\|Hg17\|chr6 (32657595-32657312)
	65-348, gnl\|Mm7\|chr17 (32391493-32391776)

	351-460, gnl\|bosTau2\|chr23 (21245814-21245923)
	351-460, gnl\|Hg17\|chr6 (32656609-32656500)
	351-460, gnl\|Mm7\|chr17 (32392370-32392479)