Non-Coding RNA Search

Ova2-C0003277_F07

Sequence:


               
               CCCCCCAGCAAGTAGGCCAGCCCCCTCACCAGGTTCAGATGCACTTGTATAACTTTCCTC
CATCCCCTCCAGCTCATTACTCACCCATGCACGGTGATGGGATTATTGCCAATGCACCCC
CTCCAGATCCCTGCCCCGTCGTGGCCCATCCACGGCCCACTGCTGCACTCTGCACCTGGC
AGTACCCCCAGCAATATTGGCTTGAATGCATCCCAGCATCATCTTTGCACAGACTGCTGC
CAGGACGATGGCAATCCCTAGCTCTTCTCATGATGGACACTGGCCACGTTTTCGAGGACT
AAATCCTCCAATTCCATGCGAACATGCACCACGTCCCCATTTCCACCCTTGTCCCAACTT
CGTGGCCTTATGGTTTGCATCAAAACTTCATGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCCCAGCAAGTAGGCCAGCCCCCTCACCAGGTTCAGATGCACTTGTATAACTTTCCTC
CATCCCCTCCAGCTCATTACTCACCCATGCACGGTGATGGGATTATTGCCAATGCACCCC
CTCCAGATCCCTGCCCCGTCGTGGCCCATCCACGGCCCACTGCTGCACTCTGCACCTGGC
AGTACCCCCAGCAATATTGGCTTGAATGCATCCCAGCATCATCTTTGCACAGACTGCTGC
CAGGACGATGGCAATCCCTAGCTCTTCTCATGATGGACACTGGCCACGTTTTCGAGGACT
AAATCCTCCAATTCCATGCGAACATGCACCACGTCCCCATTTCCACCCTTGTCCCAACTT
CGTGGCCTTATGGTTTGCATCAAAACTTCATGCAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               82-289, - strand, RNAz p=0.856819

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-289, - strand, RNAz p=0.856819

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               3-289, gnl|bosTau2|chr3 (63014256-63014540)
               

               
               3-289, gnl|canFam2|chr15 (11945871-11945450)
               

               
               3-289, gnl|danRer3|chr22 (31593377-31592917)
               

               
               3-289, gnl|dasNov1|scaffold_7249 (67422-67001)
               

               
               3-289, gnl|fr1|chrUn (244827665-244828194)
               

               
               3-289, gnl|galGal2|chr8 (24647406-24647899)
               

               
               3-289, gnl|hg17|chr1 (52608704-52609125)
               

               
               3-289, gnl|Hg17|chr1 (52609039-52608755)
               

               
               3-289, gnl|loxAfr1|scaffold_2538 (61037-60616)
               

               
               3-289, gnl|mm7|chr4 (107932272-107931851)
               

               
               3-289, gnl|Mm7|chr4 (107931935-107932219)
               

               
               3-289, gnl|monDom2|scaffold_70 (1276473-1275986)
               

               
               3-289, gnl|oryCun1|scaffold_137350 (8976-9397)
               

               
               3-289, gnl|panTro1|chr1 (50833597-50834018)
               

               
               3-289, gnl|rheMac2|chr1 (55265695-55266116)
               

               
               3-289, gnl|rn3|chr5 (129857434-129857013)
               

               
               3-289, gnl|xenTro1|scaffold_197 (255479-255945)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-289, gnl|bosTau2|chr3 (63014256-63014540)
               

               
               3-289, gnl|canFam2|chr15 (11945871-11945450)
               

               
               3-289, gnl|danRer3|chr22 (31593377-31592917)
               

               
               3-289, gnl|dasNov1|scaffold_7249 (67422-67001)
               

               
               3-289, gnl|fr1|chrUn (244827665-244828194)
               

               
               3-289, gnl|galGal2|chr8 (24647406-24647899)
               

               
               3-289, gnl|hg17|chr1 (52608704-52609125)
               

               
               3-289, gnl|Hg17|chr1 (52609039-52608755)
               

               
               3-289, gnl|loxAfr1|scaffold_2538 (61037-60616)
               

               
               3-289, gnl|mm7|chr4 (107932272-107931851)
               

               
               3-289, gnl|Mm7|chr4 (107931935-107932219)
               

               
               3-289, gnl|monDom2|scaffold_70 (1276473-1275986)
               

               
               3-289, gnl|oryCun1|scaffold_137350 (8976-9397)
               

               
               3-289, gnl|panTro1|chr1 (50833597-50834018)
               

               
               3-289, gnl|rheMac2|chr1 (55265695-55266116)
               

               
               3-289, gnl|rn3|chr5 (129857434-129857013)
               

               
               3-289, gnl|xenTro1|scaffold_197 (255479-255945)

	3-289, gnl\|bosTau2\|chr3 (63014256-63014540)
	3-289, gnl\|canFam2\|chr15 (11945871-11945450)
	3-289, gnl\|danRer3\|chr22 (31593377-31592917)
	3-289, gnl\|dasNov1\|scaffold_7249 (67422-67001)
	3-289, gnl\|fr1\|chrUn (244827665-244828194)
	3-289, gnl\|galGal2\|chr8 (24647406-24647899)
	3-289, gnl\|hg17\|chr1 (52608704-52609125)
	3-289, gnl\|Hg17\|chr1 (52609039-52608755)
	3-289, gnl\|loxAfr1\|scaffold_2538 (61037-60616)
	3-289, gnl\|mm7\|chr4 (107932272-107931851)
	3-289, gnl\|Mm7\|chr4 (107931935-107932219)
	3-289, gnl\|monDom2\|scaffold_70 (1276473-1275986)
	3-289, gnl\|oryCun1\|scaffold_137350 (8976-9397)
	3-289, gnl\|panTro1\|chr1 (50833597-50834018)
	3-289, gnl\|rheMac2\|chr1 (55265695-55266116)
	3-289, gnl\|rn3\|chr5 (129857434-129857013)
	3-289, gnl\|xenTro1\|scaffold_197 (255479-255945)