Non-Coding RNA Search

Ova2-C0003277_H12

Sequence:


               
               CAAGGCTGGGCCCCGGCCCCGACGCCGCGCGCAGCACGCCTAGCCCAACTGTTTGGACTC
TCCACTCAATCGCTGTCTTCTTTCCCAGGACTGCTTTTAAGGGGGCCTCGGGCTTGCACG
CTCGCCCCGCGCCGGAGCGCTCCGGCCCGGCCAGGGAGCGGCCCCTTGTAGAGGTCTGAG
GAGCCTATCGTGGTCCAGCCCGGCGCCCGACCCTCCCACCGTTCGGCCACTGGCCCGCTT
CTTCCTGATGCAGACTGCCGTCCACTAGAGGCTGGACAGGACCCCCGAGTGTCCAGGGTA
TGGATTGTGAACAAGTTGGTTTTGTTTCACGTGTTCATTTAGTGTCTTGTTATGTAGCCC
TGGCTTGCGTGGAACTTATTGCAGTCCTCCTGCCTTAGCTTCTTGAGTGCTTGGATTATT
TTATAGGTGATTCATGGCAGGGGACGTGGAAGGATTCTGTTCCTCCATCCATGACACCAG
TGTCTCTGCTGGGTTCAGAGCACTGTATGAGGAGGGATTGCTTCTTGATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAAGGCTGGGCCCCGGCCCCGACGCCGCGCGCAGCACGCCTAGCCCAACTGTTTGGACTC
TCCACTCAATCGCTGTCTTCTTTCCCAGGACTGCTTTTAAGGGGGCCTCGGGCTTGCACG
CTCGCCCCGCGCCGGAGCGCTCCGGCCCGGCCAGGGAGCGGCCCCTTGTAGAGGTCTGAG
GAGCCTATCGTGGTCCAGCCCGGCGCCCGACCCTCCCACCGTTCGGCCACTGGCCCGCTT
CTTCCTGATGCAGACTGCCGTCCACTAGAGGCTGGACAGGACCCCCGAGTGTCCAGGGTA
TGGATTGTGAACAAGTTGGTTTTGTTTCACGTGTTCATTTAGTGTCTTGTTATGTAGCCC
TGGCTTGCGTGGAACTTATTGCAGTCCTCCTGCCTTAGCTTCTTGAGTGCTTGGATTATT
TTATAGGTGATTCATGGCAGGGGACGTGGAAGGATTCTGTTCCTCCATCCATGACACCAG
TGTCTCTGCTGGGTTCAGAGCACTGTATGAGGAGGGATTGCTTCTTGATGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               416-531, + strand, RNAz p=0.889086

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               416-531, + strand, RNAz p=0.889086

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_030624, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_030624, +

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               117-289, gnl|bosTau2|chrX (37738086-37737915)
               

               
               117-289, gnl|canFam2|chrX (19603916-19604045)
               

               
               117-289, gnl|dasNov1|scaffold_27215 (19075-19198)
               

               
               117-289, gnl|hg17|chrX (23802609-23802739)
               

               
               117-289, gnl|mm7|chrX (89622096-89621968)
               

               
               117-289, gnl|monDom2|scaffold_48 (7919844-7919650)
               

               
               117-289, gnl|oryCun1|scaffold_193557 (38998-38873)
               

               
               117-289, gnl|panTro1|chrX (24636860-24636990)
               

               
               117-289, gnl|rheMac2|chrX (21841004-21841134)
               

               
               117-289, gnl|rn3|chrX (81702599-81702470)
               


               
               416-531, gnl|bosTau2|chrX (37725666-37725551)
               

               
               416-531, gnl|Hg17|chrX (23784483-23784370)
               

               
               416-531, gnl|Mm7|chrX (89639057-89639171)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               117-289, gnl|bosTau2|chrX (37738086-37737915)
               

               
               117-289, gnl|canFam2|chrX (19603916-19604045)
               

               
               117-289, gnl|dasNov1|scaffold_27215 (19075-19198)
               

               
               117-289, gnl|hg17|chrX (23802609-23802739)
               

               
               117-289, gnl|mm7|chrX (89622096-89621968)
               

               
               117-289, gnl|monDom2|scaffold_48 (7919844-7919650)
               

               
               117-289, gnl|oryCun1|scaffold_193557 (38998-38873)
               

               
               117-289, gnl|panTro1|chrX (24636860-24636990)
               

               
               117-289, gnl|rheMac2|chrX (21841004-21841134)
               

               
               117-289, gnl|rn3|chrX (81702599-81702470)
               


               
               416-531, gnl|bosTau2|chrX (37725666-37725551)
               

               
               416-531, gnl|Hg17|chrX (23784483-23784370)
               

               
               416-531, gnl|Mm7|chrX (89639057-89639171)

	117-289, gnl\|bosTau2\|chrX (37738086-37737915)
	117-289, gnl\|canFam2\|chrX (19603916-19604045)
	117-289, gnl\|dasNov1\|scaffold_27215 (19075-19198)
	117-289, gnl\|hg17\|chrX (23802609-23802739)
	117-289, gnl\|mm7\|chrX (89622096-89621968)
	117-289, gnl\|monDom2\|scaffold_48 (7919844-7919650)
	117-289, gnl\|oryCun1\|scaffold_193557 (38998-38873)
	117-289, gnl\|panTro1\|chrX (24636860-24636990)
	117-289, gnl\|rheMac2\|chrX (21841004-21841134)
	117-289, gnl\|rn3\|chrX (81702599-81702470)

	416-531, gnl\|bosTau2\|chrX (37725666-37725551)
	416-531, gnl\|Hg17\|chrX (23784483-23784370)
	416-531, gnl\|Mm7\|chrX (89639057-89639171)