Non-Coding RNA Search

OvaF-UMC-pfeto1-001-a02

Sequence:


               
               AATTTGAGTTTATATAAAAAACAAAATCAACAGTCTATAAGGGAAAACATAAATACAGTC
CATGTCAGCTGCCTTTCAACACTGGATAAGCCCCAGAGTGAGCAGAAATTGAGGCGTGAA
TCAGCCTTTTTCATTTGTTTTCATTTTCCATGTGCCCCTTATGGTGTGAGTATCACACCA
AGTGGGTGTGAATCTAGTGCTTTTAAATGTTTTTTTTTTTTTTTTCCTTAATTAAACATA
GTCCTTGAATCCAAGCCAGCTTCTTCAGCTGCTGTTTAACCAAAGAAGCAGCAATCAAGG
GTGATTTTGACTGTAAGCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AATTTGAGTTTATATAAAAAACAAAATCAACAGTCTATAAGGGAAAACATAAATACAGTC
CATGTCAGCTGCCTTTCAACACTGGATAAGCCCCAGAGTGAGCAGAAATTGAGGCGTGAA
TCAGCCTTTTTCATTTGTTTTCATTTTCCATGTGCCCCTTATGGTGTGAGTATCACACCA
AGTGGGTGTGAATCTAGTGCTTTTAAATGTTTTTTTTTTTTTTTTCCTTAATTAAACATA
GTCCTTGAATCCAAGCCAGCTTCTTCAGCTGCTGTTTAACCAAAGAAGCAGCAATCAAGG
GTGATTTTGACTGTAAGCTGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               101-218, - strand, RNAz p=0.961785

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               101-218, - strand, RNAz p=0.961785

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-218, gnl|bosTau2|chr22 (26515440-26515213)
               

               
               1-218, gnl|Hg17|chr3 (65496894-65496641)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr22 (26515440-26515213)
               

               
               1-218, gnl|Hg17|chr3 (65496894-65496641)

	1-218, gnl\|bosTau2\|chr22 (26515440-26515213)
	1-218, gnl\|Hg17\|chr3 (65496894-65496641)