Non-Coding RNA Search

OvaN-UMC-pnatal3-001-h03

Sequence:


               
               GTTCATCTCTTGAGCAACGGACAGTGAAGGAGGAGGCCAGAGGAAATAGCAGGAGGATCA
TGGGAGAAAGATGGGGGGAGGGGCTGGAACCTCTGGAGGAGGAAGCTCAGGCCCTTAGGG
TACCAGGGAACACCAAGGGCCCATTTTGTGGAAGGGGGCCCCTGGGAAATTTATCTTGGA
GGTCTATCTGCATAAGAATGAAAAAGCATTggagttccctggcggcctagtgggttaagg
atccagcattgtccctgctctggctctggtcactgctgtggcttggatttgatccctgac
ccaggaactgctacatgGCTGTGGACGCAGCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTCATCTCTTGAGCAACGGACAGTGAAGGAGGAGGCCAGAGGAAATAGCAGGAGGATCA
TGGGAGAAAGATGGGGGGAGGGGCTGGAACCTCTGGAGGAGGAAGCTCAGGCCCTTAGGG
TACCAGGGAACACCAAGGGCCCATTTTGTGGAAGGGGGCCCCTGGGAAATTTATCTTGGA
GGTCTATCTGCATAAGAATGAAAAAGCATTggagttccctggcggcctagtgggttaagg
atccagcattgtccctgctctggctctggtcactgctgtggcttggatttgatccctgac
ccaggaactgctacatgGCTGTGGACGCAGCCAAG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               37-209, - strand, RNAz p=0.998179
               

               
               39-209, - strand, RNAz p=0.999848

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               37-209, - strand, RNAz p=0.998179
               

               
               39-209, - strand, RNAz p=0.999848

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-209, gnl|bosTau2|chr7 (45596328-45596132)
               

               
               1-209, gnl|canFam2|chr2 (37655683-37655876)
               

               
               1-209, gnl|canFam2|chr2 (37655683-37655876)
               

               
               1-209, gnl|dasNov1|scaffold_27883 (40211-40004)
               

               
               1-209, gnl|dasNov1|scaffold_27883 (40211-40004)
               

               
               1-209, gnl|echTel1|scaffold_312120 (6398-6622)
               

               
               1-209, gnl|echTel1|scaffold_312120 (6398-6622)
               

               
               1-209, gnl|hg17|chr10_random (57554-57775)
               

               
               1-209, gnl|hg17|chr5 (138882109-138882330)
               

               
               1-209, gnl|Hg17|chr5 (138882112-138882328)
               

               
               1-209, gnl|loxAfr1|scaffold_25210 (13311-13541)
               

               
               1-209, gnl|loxAfr1|scaffold_25210 (13311-13541)
               

               
               1-209, gnl|oryCun1|scaffold_209245 (52526-52718)
               

               
               1-209, gnl|oryCun1|scaffold_209245 (52526-52718)
               

               
               1-209, gnl|panTro1|chr4 (145490276-145490497)
               

               
               1-209, gnl|panTro1|chr4 (145490276-145490497)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-209, gnl|bosTau2|chr7 (45596328-45596132)
               

               
               1-209, gnl|canFam2|chr2 (37655683-37655876)
               

               
               1-209, gnl|canFam2|chr2 (37655683-37655876)
               

               
               1-209, gnl|dasNov1|scaffold_27883 (40211-40004)
               

               
               1-209, gnl|dasNov1|scaffold_27883 (40211-40004)
               

               
               1-209, gnl|echTel1|scaffold_312120 (6398-6622)
               

               
               1-209, gnl|echTel1|scaffold_312120 (6398-6622)
               

               
               1-209, gnl|hg17|chr10_random (57554-57775)
               

               
               1-209, gnl|hg17|chr5 (138882109-138882330)
               

               
               1-209, gnl|Hg17|chr5 (138882112-138882328)
               

               
               1-209, gnl|loxAfr1|scaffold_25210 (13311-13541)
               

               
               1-209, gnl|loxAfr1|scaffold_25210 (13311-13541)
               

               
               1-209, gnl|oryCun1|scaffold_209245 (52526-52718)
               

               
               1-209, gnl|oryCun1|scaffold_209245 (52526-52718)
               

               
               1-209, gnl|panTro1|chr4 (145490276-145490497)
               

               
               1-209, gnl|panTro1|chr4 (145490276-145490497)

	37-209, - strand, RNAz p=0.998179
	39-209, - strand, RNAz p=0.999848

	1-209, gnl\|bosTau2\|chr7 (45596328-45596132)
	1-209, gnl\|canFam2\|chr2 (37655683-37655876)
	1-209, gnl\|canFam2\|chr2 (37655683-37655876)
	1-209, gnl\|dasNov1\|scaffold_27883 (40211-40004)
	1-209, gnl\|dasNov1\|scaffold_27883 (40211-40004)
	1-209, gnl\|echTel1\|scaffold_312120 (6398-6622)
	1-209, gnl\|echTel1\|scaffold_312120 (6398-6622)
	1-209, gnl\|hg17\|chr10_random (57554-57775)
	1-209, gnl\|hg17\|chr5 (138882109-138882330)
	1-209, gnl\|Hg17\|chr5 (138882112-138882328)
	1-209, gnl\|loxAfr1\|scaffold_25210 (13311-13541)
	1-209, gnl\|loxAfr1\|scaffold_25210 (13311-13541)
	1-209, gnl\|oryCun1\|scaffold_209245 (52526-52718)
	1-209, gnl\|oryCun1\|scaffold_209245 (52526-52718)
	1-209, gnl\|panTro1\|chr4 (145490276-145490497)
	1-209, gnl\|panTro1\|chr4 (145490276-145490497)